| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3232 |
|---|
| Symbol | |
|---|
| ID | 3904403 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 3826192 |
|---|
| End bp | 3827379 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637880557 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_482318 |
|---|
| Protein GI | 86741918 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.904986 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCCA GCCAGGACGC GGTCGAGACG AACTCCACCG CGGTTCGCCA CGACGTATTC
AAGGTGACCG CCGCGACCTG TGGCGCGCTG TTCGTGGACA GCCTGCTCTA CAGCATCGTG
GTACCTGTCC TGCCGAACTA CGCGGACCAG TTCGATGTGG GGTCGGCCGG GGTGAGCCTG
CTGTACGCCG CGTACGCGGT CGCCCTGCTG GCGGGGACTC CCCTGATGGG CCGGGTCGGC
GACCGGTTCG GGCATGAACG GCCATTCCAG GTCGGTGCCG CCGGTCTGCT GATCTCGACG
GTCGGTTTCG CGCTGGCTCG TAGTTATCCC GAACTTCTGG CTGCCCGCAC GCTCCAGGGA
GTCGCCGCGG CGGCGCTGTG GACGAACGGA ATCGCTCTGC TCGCCCAGCG GGTGCGGCCC
CCCAGGGCCG GCGGCGCGAT GGGAGCGGCG ATGTCCAGTA TGTCCGTCGG TATGGTCGCT
GGCCCAGTGA TCGGCGGGCT GCTGGCCGAA CGCTTCGGCG ACGCGGCGCC GTTCGTGGTG
TGCACGGTGC TCACCGCGGT ACTCGCCGCC GTCCTGCCGT GGCTGGTCCG CGGCGCCGCG
CAGCCGGTAC GTGAGCAGCA GCCATCCGGC TGGCGTTCGC TCCTGCCGAC CCTGCTCGCT
GTCGCCTTCG GAGCGGCGAC GCTGAGCATG CTGGAACCGC TGCTCCCGCT GCACCTGGCC
GACCGGTTCG GCAGCGGCCC GGCCACGCTG GGTCTGATCT TCGGGGCGGC GACGCTGGCG
CACGGGCTCG CCGGGGTGCC GGTCGGCCTG CTTGGGGACC GGCGGCCGGA TCTGCCGTTG
ATCCCGGGCG GGTTGCTGGG GATGAGCGCC GTCCTGCCGC TGCTCCCCAG GTTCGACGTT
GGCTGGACGA CGGTGCTGCT GGTGACGTTC GCCGTTTGCT TCTCCTTTGT CCTCATCCCT
GCGCTGGGGA TTCTCACCGC AGCGGCGGAA CGGCGGGGGG TCGGGCATGG GGCCATCTTC
GCGATGTTCA ACATCGCCTA TGCCGTGGGG ATGATGAGCG GCCCTCTGCT CGGCGCGCTG
GGTACCGGCT TCAGCAGCGT CACCACCGCG CTTACCGGCA TGGCGGCGGT TCTCGTCCTG
GGCGCCGTCC TGATCCTGAC CGCGGCGCAG CGCCGCTCCG TCACCTGA
|
|---|
| Protein sequence | MAASQDAVET NSTAVRHDVF KVTAATCGAL FVDSLLYSIV VPVLPNYADQ FDVGSAGVSL
LYAAYAVALL AGTPLMGRVG DRFGHERPFQ VGAAGLLIST VGFALARSYP ELLAARTLQG
VAAAALWTNG IALLAQRVRP PRAGGAMGAA MSSMSVGMVA GPVIGGLLAE RFGDAAPFVV
CTVLTAVLAA VLPWLVRGAA QPVREQQPSG WRSLLPTLLA VAFGAATLSM LEPLLPLHLA
DRFGSGPATL GLIFGAATLA HGLAGVPVGL LGDRRPDLPL IPGGLLGMSA VLPLLPRFDV
GWTTVLLVTF AVCFSFVLIP ALGILTAAAE RRGVGHGAIF AMFNIAYAVG MMSGPLLGAL
GTGFSSVTTA LTGMAAVLVL GAVLILTAAQ RRSVT
|
|---|
| |