| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3176 |
|---|
| Symbol | pheT |
|---|
| ID | 3903901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 3763736 |
|---|
| End bp | 3766282 |
|---|
| Gene Length | 2547 bp |
|---|
| Protein Length | 848 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 637880500 |
|---|
| Product | phenylalanyl-tRNA synthetase subunit beta |
|---|
| Protein accession | YP_482262 |
|---|
| Protein GI | 86741862 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0072] Phenylalanyl-tRNA synthetase beta subunit |
|---|
| TIGRFAM ID | [TIGR00472] phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.388314 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.465813 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGATCG TGATGTCCTG GCTGCGGGAG TATGTGGCGG GGCTGCCGCC CACGCGGGCC
GTCGCCGACG CGTTGATCCG GGCCGGTTTC GAGGTCGAGG GACTGCGTAG CGTCGGGGGC
GAGTTCTCCG GCGTGGTCGT CGGGGAGATC GTCGACTTCG AGATCGTCGA GACGAAGAAG
AAGGCCGTCC GCTGGTGCCA GGTCCGGGTC GCCGAGAGCG CCGGAGCCGA GGATGCCGGA
GCCGAGAGCG CCGGATCCAG GGGCGAGGGC GTGCGCGGCG TCATCTGCGG GGCGCACAAC
TTCGCCGTCG GCGACCGGGT GGCGGTCGCG CTGCCCGGCG CCGTGCTGCC CGGCGGGTTC
GAGATCACCG CGCGGAGGAC CTACGGCCAT GTCAGCGAGG GGATGATCTG CTCGGCCCGG
GAACTGGGCC TCGGCGAGGA GTCCGACGGC ATCCTGGTGC TCGCGCCGCG GGCGCCGATC
GGCGCCGACG TCGCCGAGCT GCTCGATCTC GCCGACGAGG TGCTTGACAT CGCGGTCACC
CCGGACCGGG GCTACGGTCT GTCGGTGCGG GGGATCGCCC GGGAGGCGGC GACCGCCTTC
GCGCTGCCGT TCACGGACCC GGGCGCGCCG GCGGACCCGG CAGCCGTCCC GGGGCCCGCC
AGGGAGGCCT ATCCGGTCGT CGTCGAGGAC ACCGCGGCGT GTGACCGCTA CGTCGCCCGG
GTGGTGACCG GGGTCGACTC GCGGGCCACC ACCCCGCTGG GGTGGCAGCG GCGGCTGTCG
CTGTCCGGGA TGCGGTCAAT CTCGGTGCCG GTCGACGTCA CCAACGCCGT GCTGCTGGGC
CTCGGCCAGC CGTTGCACGC CTTCGACCGG GCGAAGCTGG CCGGCGCGAT CATTGTGCGC
CGGGCCGTCG CCGGAGAGAC GCTGCGCACC CTCGACGGGG TCGACCGCAC TCTCGACCCC
GAGGATCTGG TCATCGCCGA CGACACCGGT CCGATCGCGC TCGCCGGGGT GATGGGCGGG
GCCAGCACGG AGGTGTCCGC GACGACCACC GACATCGTCC TCGAGGCTGC GCACTTCGAC
CCGATCACGG TGGCCCGCAC CGCCCGCCGG CACCGGCTGT CCTCGGAGGC GTCGCGGCGT
TTCGAACGCG GCGTCGACCC GGCACTCGCG CCGGTCGCCG CGGCGCTGGC CGTCGACCTG
CTCGCCGAGC TCGCCGCCGC CCGTCCCGAG CCCGGCGTGA CCGACCTGGA CCACCGCCCC
GCCCCGGCGC CGGTGACCCT GCCGCTGACG GAACCGGAAC GCCTCGCCGG CCGGCCCTAC
CCCGCCGAGG TGGTGCGGCG CCGGCTCGTC GACGTCGGCT GCGCGGTGGC TGACGGGTCG
GCGACCGAGG ACCTGCCCGG TGTTCTGATC GCGACGCCGC CGTCCTGGCG TCCCGACCTG
ACCCGGCCCG CCGATCTCGT CGAGGAGATC ATGCGGCTGG AGGGGTACGA CACCATCCCG
GTGACCCTGC CGTCGCTGCC CGCGGGGCGC GGGCTCACCG CCGCGCAGCG GATGCACCGC
GCGGTGGGCC GGGCGCTGGC CCATGCGGGG TTCGCCGAGG TGCTTACCCT GCCGTTCGTA
CCCGAGGACG CCGCCGACGC GCTCAGCCTG GCCGCGGCCG ACCCGCGGCG TGCGGCGGTC
CGGATCGCGA ACCCGATCGC CGAGGACGCC GGCTACCTGC GGACGACCCT GCTACCCGGA
CTGATCGCGG CGGCCGTGCG CAACATCGGC CGGGGGCAGC GCGATCTCGC CCTGTTCGAG
AGCGGTCTGG TGTTCCGGGA ACGCGAACGG ATCCCGACGG ACGTCGTCAC CCCGCCGGTG
GATCGTCGGC CCTCCGCCGC GGAGATCGCC GCTCTGGACT CGACCCTGCC CGGCCAGCCC
CGCCACGTCG CCGCGCTCCT CACCGGGCGC CGTGAGCCAG GTGGCTGGTC CACGCCGGCC
CGGGACGCGG ACTGGGCGGA CGCGGTGGAC GCCGCGCACG TGGTCGCCGA GGCGGTGGGC
GTGACCCTCA CGGTCAGAGC CGGCAATGTC ATGCCCTGGC ACCCGGGCCG CCTCGCGGAG
CTCTCGATCG ACGGCCGGGT CGTGGGCCAC GCGGGTGAGC TGCACCCCCG GGTGCTCAGC
GACGTCGGGC TTCCGCCTCG GGCCGGCGCG ATGGAACTGG ACCTCGATGC CCTGATCGAG
GTCGCGTCGG CGGCGCCGCC GATGATCGCG CCGACGATCT CCACCTATCC GCCCGCCGAC
CGGGATGTGG CGCTCGTCGT GCCGATCGAG GTGCCGGTCG CCGATGTGAC GGCGGCACTG
CGGGCCGGAG CCGGTGACCT GCTGGAGTCC CTGACCCTCT TCGACGTCTT CGAGGGCGCC
CAGGTCGGGG TCGGTCAGCG CTCGCTGGCC TTCGGCCTGC GGCTGCGCGC CGGGGACCGG
ACGCTGACGG CCGCCGAGGC GAACGCGGTG CGGGACGCGG CGGTCGCCCG GGCGGCGGAG
CTTACCGGCG CGTCCCTGCG CGCCTGA
|
|---|
| Protein sequence | MLIVMSWLRE YVAGLPPTRA VADALIRAGF EVEGLRSVGG EFSGVVVGEI VDFEIVETKK
KAVRWCQVRV AESAGAEDAG AESAGSRGEG VRGVICGAHN FAVGDRVAVA LPGAVLPGGF
EITARRTYGH VSEGMICSAR ELGLGEESDG ILVLAPRAPI GADVAELLDL ADEVLDIAVT
PDRGYGLSVR GIAREAATAF ALPFTDPGAP ADPAAVPGPA REAYPVVVED TAACDRYVAR
VVTGVDSRAT TPLGWQRRLS LSGMRSISVP VDVTNAVLLG LGQPLHAFDR AKLAGAIIVR
RAVAGETLRT LDGVDRTLDP EDLVIADDTG PIALAGVMGG ASTEVSATTT DIVLEAAHFD
PITVARTARR HRLSSEASRR FERGVDPALA PVAAALAVDL LAELAAARPE PGVTDLDHRP
APAPVTLPLT EPERLAGRPY PAEVVRRRLV DVGCAVADGS ATEDLPGVLI ATPPSWRPDL
TRPADLVEEI MRLEGYDTIP VTLPSLPAGR GLTAAQRMHR AVGRALAHAG FAEVLTLPFV
PEDAADALSL AAADPRRAAV RIANPIAEDA GYLRTTLLPG LIAAAVRNIG RGQRDLALFE
SGLVFRERER IPTDVVTPPV DRRPSAAEIA ALDSTLPGQP RHVAALLTGR REPGGWSTPA
RDADWADAVD AAHVVAEAVG VTLTVRAGNV MPWHPGRLAE LSIDGRVVGH AGELHPRVLS
DVGLPPRAGA MELDLDALIE VASAAPPMIA PTISTYPPAD RDVALVVPIE VPVADVTAAL
RAGAGDLLES LTLFDVFEGA QVGVGQRSLA FGLRLRAGDR TLTAAEANAV RDAAVARAAE
LTGASLRA
|
|---|
| |