| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3030 |
|---|
| Symbol | |
|---|
| ID | 3904383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 3596486 |
|---|
| End bp | 3598216 |
|---|
| Gene Length | 1731 bp |
|---|
| Protein Length | 576 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637880350 |
|---|
| Product | periplasmic sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_482116 |
|---|
| Protein GI | 86741716 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.280253 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGGC GCATCCTGGC CGCCCAGCTC GCGCTCACGA CGGCGCTGCT TGTCGGCCTG
TGCGTCCCGA TGGGGCTCGA CGCCACCCGT CACGACCGGG CGCTGTTCGG CCTGCGGCTC
ACGGCCGCGA TGCAGGCCTA CTGCGCCGAG GTGAAGTGGC GGCGACTGTC CGCCGGCGCG
GCCCCGCTGC CCGCCGCCGT ACGCGACAGT ACGGCCGTGC CACCGGACGA GCTCCGGCTG
TTCGACCCGA ACGGTACGCC CGTGGCCGAC ACCGGTGACG ACATCCCGAT CATGGGCTGG
GATCTGGATC GGGCCCGCCG GGAGAACGTG GTCATCAACC CGAACGCGGC CAATCGACAC
CGGATGATCC TTGTTGCTCC GGTGTCCAAC GCGCAGGGTC TGGTCGGCAT CCTGGCCGTC
GCGCGCAGCG ATGCCGGGCT GCGCGCCTCG ATCATCCACC GGTGGACGAT GATCGCCCTC
GCGGGCGTCC TGGTCACGCT GGCCGCATTG GGGATCTCGA TACTGCTGGC CCGCTGGGTG
GGCCGGCCGC TGCGCCGGCT CGAGCAGGCA GCGACCGAAC TCGGTGCCGG TGATCTCACG
ATCCGGGCCA GAGCCGTCGG TGGCCCGCCC GAGGCACGCA AACTTGCCAC GACGTTCGAC
GCGATGGCGG GACGGCTCCA GTTGCTGGTC GACAGCCAGC GCCGGTTCCT CGCCGACGTC
TCCCACCAGA TCCGCACCCC GCTGACGGCG ATGCGCCTGC GCCTGGAGCT GCTGCAACAG
GACGTGGACG CGGACACCAC CGACGAGGTC GCGGGCACCC TGGTCGAGGT GCACCGGCTC
TCCCGGATGG TCGACGGGCT GCTGGCGGTC TCCCGGGCCG AGCATGCGCC GATCCCGACC
CAGCCGATCC CCCTCGCGGT CGTCGCCGAG GAACGATGCC TGATCTGGCG ACCGGTCGCA
GCCGCCGCCG GAGTGACGCT GACCTGCGAC GTCGACGCGG ACCAGGTCGT CCAGTGCACC
CCGGGGCACC TGGAGCAGAT CCTCGACAAT CTCCTCAGCA ACGCGCTGGA GGCCACCCCG
TCCGGCGGCC GGGTCAGCGT CACGTCCGGG ACGAACCCAC CGGCCCAGCC ACGCCCGGTG
GGCGCCGGAG GCACCGCGGA GGCGGGCCTC GGGACGGGGA GCGCCGCGGA CGAGTTGGAC
GAGATGAACG TCACCGGGCC GCAGAGCACC ATGACGGCGG AAAGCATGAC GGCGGAAAGC
ATGACGCGGC TCACGGTCGC CGACAGCGGA CGCGGCATGA GCGCCGAGCA GCGGGCCGCC
GCCTTCCGCC GGTTCAGCTC CAACCTCAGT GCCGACCAGC GAGAAGCCGA CCAGCGAGGA
GAGGTGCCCG GCCGGGCCGA TCGGCGCGGG AACGGCCTCG GGCTCGCCAT CGTGCATGCC
CTGACGACCG CCGACGGCGG GACGGTCACT CTGGCCGAGG GTGACAACGG GGGTCTGTGC
GTCGTCCTTG ACCTGCCCCG GACACATCCA GACCGACGGC CGACGGCCGC CCGGCCGGCA
CCCGCGCAGA GATCCGTGGA CGCGGCGGGC GGCACCCGCA TCGCGGCCAC GCCGGGTTCT
GGGGGCACGG ACGGCCCGGG CCCTCGGCGG ACATCGGCCA CCATCCACGA ACTACTGGAA
GTAGTGGATT ACGTCACGAC AGATTACGCC ATGGCCGACG ACAGGCCGTG A
|
|---|
| Protein sequence | MTRRILAAQL ALTTALLVGL CVPMGLDATR HDRALFGLRL TAAMQAYCAE VKWRRLSAGA
APLPAAVRDS TAVPPDELRL FDPNGTPVAD TGDDIPIMGW DLDRARRENV VINPNAANRH
RMILVAPVSN AQGLVGILAV ARSDAGLRAS IIHRWTMIAL AGVLVTLAAL GISILLARWV
GRPLRRLEQA ATELGAGDLT IRARAVGGPP EARKLATTFD AMAGRLQLLV DSQRRFLADV
SHQIRTPLTA MRLRLELLQQ DVDADTTDEV AGTLVEVHRL SRMVDGLLAV SRAEHAPIPT
QPIPLAVVAE ERCLIWRPVA AAAGVTLTCD VDADQVVQCT PGHLEQILDN LLSNALEATP
SGGRVSVTSG TNPPAQPRPV GAGGTAEAGL GTGSAADELD EMNVTGPQST MTAESMTAES
MTRLTVADSG RGMSAEQRAA AFRRFSSNLS ADQREADQRG EVPGRADRRG NGLGLAIVHA
LTTADGGTVT LAEGDNGGLC VVLDLPRTHP DRRPTAARPA PAQRSVDAAG GTRIAATPGS
GGTDGPGPRR TSATIHELLE VVDYVTTDYA MADDRP
|
|---|
| |