| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2669 |
|---|
| Symbol | |
|---|
| ID | 3904893 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 3150887 |
|---|
| End bp | 3152065 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637879994 |
|---|
| Product | integral membrane protein |
|---|
| Protein accession | YP_481760 |
|---|
| Protein GI | 86741360 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5563] Predicted integral membrane proteins containing uncharacterized repeats |
|---|
| TIGRFAM ID | [TIGR02913] probable extracellular repeat, HAF family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.652758 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.165313 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGATC GAAGGACATT CATCCGTGCC GCCACGGTGG CCACGACCCT CGCGCCCTGG
TCGCTCGGCT ACCTCGGCGC GGCCACCGCG GCGGGCGCGG CCACCGCGGC GCCGTCCTCC
CCACCCGCGC CCACCCGACC CGCCGTCGTG GACATTCCAT CCCCGACCGG GGCCTCCGGT
CTCCTCACCG GCGGCAACAC CGCAGGCCTT TTCGCGGGCT ACTGGCAGAC CTCATCCTCC
GAGCTCAGTG GGTTCGTCTA CCACGGCGGT ACGGTGCGCG GCCTGCCGGG GAACAGCCGG
CCGGCCGCGG TGAGCGAGGC CGGCGTGGTC GTCGGCGAGA ACACCACGCG TTACAGCCGG
GAGGCGTTCC GCTGGAACCG TGGCGTCTAT CAGTCGCTGG GATTCCTCGG CGGCACCCCC
AGTCAGGGCG GACAGTCCAG TACCGCGGTC GACGTCAGCG ACACCGGATT CATCGTGGGG
ACCAGCACCA CCAATACGGG CGAGCAGCAC GCCTACCGGT GGTCGAACGG CACGATGACG
GATCTGGGCA CGCTTGGCGG ACCGTTGAGT TCCGCCGTGG CCGTCACGGT GCAGGGAAGG
GTGGTGGGTA ACAGCCTCAC CCGGGAGGGC GCCAGCCACG GGTTTCTCTG GTCGGCCGGC
ACAATATCGG ATCTCGGGAC CCTCGGCGGT TCCTCGACCG TCGTCGCCGA CGTGAACAAC
GCCAGGCAGA TCGTGGGGAC CAGTGAGACC TCGGACGGCC ATTCCCGCGC GTTCCTGTGG
GACGGCGGCC GCATGACCGA TCTCGGGACC CTCGGCAGTG ACCTGCACAG CGAGGCGGTC
GCCGTGAACA GGCTCGGTCA GGTGTTGGTG CGCAGCCTCG GATCGTCGGG TGGCGGGTTC
CTGTGGATCG CGGGTCGCCG CATCCCGATC ACCTCACCGC TCGGCCCGCT GGAGCTTCTC
GGCCTCAATG ATCACGGTGT GGTGTGCGGG ACGGTGCCCT CGGGTCAGGG CAGCCACGCG
TTCCGCTGGT ACCGCGGCCG GCTGACCGAT CTGGGCACCC TCGGAGGACC GGTGAGCACG
GGCAACGCCG CCACCCCGAA CAACGTCGTG CTCGGTTCCG CGACCACCAC GGACTCCCCG
TTTCCCCATG CGGCGTTCTG GCCGAACACC GGCGCCTGA
|
|---|
| Protein sequence | MNDRRTFIRA ATVATTLAPW SLGYLGAATA AGAATAAPSS PPAPTRPAVV DIPSPTGASG
LLTGGNTAGL FAGYWQTSSS ELSGFVYHGG TVRGLPGNSR PAAVSEAGVV VGENTTRYSR
EAFRWNRGVY QSLGFLGGTP SQGGQSSTAV DVSDTGFIVG TSTTNTGEQH AYRWSNGTMT
DLGTLGGPLS SAVAVTVQGR VVGNSLTREG ASHGFLWSAG TISDLGTLGG SSTVVADVNN
ARQIVGTSET SDGHSRAFLW DGGRMTDLGT LGSDLHSEAV AVNRLGQVLV RSLGSSGGGF
LWIAGRRIPI TSPLGPLELL GLNDHGVVCG TVPSGQGSHA FRWYRGRLTD LGTLGGPVST
GNAATPNNVV LGSATTTDSP FPHAAFWPNT GA
|
|---|
| |