| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_2504 |
|---|
| Symbol | |
|---|
| ID | 3904882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 2955836 |
|---|
| End bp | 2956627 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637879834 |
|---|
| Product | 3-oxoacid CoA-transferase, subunit A |
|---|
| Protein accession | YP_481600 |
|---|
| Protein GI | 86741200 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.361118 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACAAGG TCGTGGCGTC GGCGCAGGAG GCGGTCGCCG ATATTCCGGT CGGGGCCAGC
GTGGCGAGTG GTGGTTTCGG GGTCTGCGGC ATCCCGTCGG TGCTCCTTGC CGCGCTCGCC
GAACAGGGGG CCTCGGACCT GACCGTCATT TCCAACAACT GCGGGATCCC GGGTGTGGGT
AACTCGCTGC TGCTGGAGGG CGGGCGGATC CGCCGTCTGG TGGCGTCGTA CGTGGGGGAG
AACAAGGAAC TGGAACGGCA GTACCTCTCC GGGAAGGTCG AGATCGAGTT CAACCCGCAG
GGGACGCTGG CGGAGCGGCT GCGCGCCGGT GGAGCCGGGA TCGCGGCGTT CTACACCCGC
ACCGGCGTCG GCACGCAGGT CGCCGACGGC GGGCTGCCGA TCAGGTACGA CGCCTCGGGC
GAGGTGGCGC TGGCCTCGCA GCCCAAGCCG ACCGAGGTCT TCGAGGTCGA CGGGGTGCCG
CAGGTCTTCG TGCGGGAGAC GGCGCTGCGG CCGGACTTCG CCCTGGTGCG GGCCCGGCGT
GGTGACCGGC ACGGCAACCT GGTTTTCCGC AGGGCCGCCC GCAACTTCAA CCCGCTCTGC
GCCATGGCCG GGAGGGTGAC GATCGCGGAA GTGGAGGAAC TCGTCGAGCC GGGTGCGCTG
GATCCCGACG AGATCCACCT GCCCGGAGTC TTCGTGCAGC GGGTGGTGGC GTTGACGCCC
GGCCAGGCCG CGGACAAGGG GATCGAGCGG CTCACCCTGC GTGCCGTCAC AACCGCTGCA
GGAGGTGCCT GA
|
|---|
| Protein sequence | MDKVVASAQE AVADIPVGAS VASGGFGVCG IPSVLLAALA EQGASDLTVI SNNCGIPGVG
NSLLLEGGRI RRLVASYVGE NKELERQYLS GKVEIEFNPQ GTLAERLRAG GAGIAAFYTR
TGVGTQVADG GLPIRYDASG EVALASQPKP TEVFEVDGVP QVFVRETALR PDFALVRARR
GDRHGNLVFR RAARNFNPLC AMAGRVTIAE VEELVEPGAL DPDEIHLPGV FVQRVVALTP
GQAADKGIER LTLRAVTTAA GGA
|
|---|
| |