| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1730 |
|---|
| Symbol | |
|---|
| ID | 3906796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 2063941 |
|---|
| End bp | 2066907 |
|---|
| Gene Length | 2967 bp |
|---|
| Protein Length | 988 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 637879068 |
|---|
| Product | response regulator receiver/SARP domain-containing protein |
|---|
| Protein accession | YP_480835 |
|---|
| Protein GI | 86740435 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3947] Response regulator containing CheY-like receiver and SARP domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0938978 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0949526 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCCGGC CGCCCGCGCG CCGCCGGCCC CGTCCCGCCC GGCGCAGGGG CACCGCGGGT
CTGCTGCTGG TCGGCCGGCT GCTGCGCGCC CTGGTCGCCC TGGCCGCGCT GGTCGCCCTG
GTCGGCGGGC TGCCCTGGGC GCTGTGGCAC TTCGTCGGCT GGCCCCTACC CCACCACGTG
CCGTCCTGGG CAGAGGTCTC GGCGAGGCTG ACCGGGCCGA TGGACGACAC CCTGCTGCTC
GACGTCCTCG CGGTGCTGCT GTGGCCGCTG TGGTTCGCCT TCGCGGTCTC GGTCACGCTG
GCCGTGCCCG AGGTGGTGCG CCAGGCCCGC TGGCCCGGCC ACGGCGTCGC GCTGCCCGCC
CGGGGGATGC GCGGGTTCGC CACGTTCCTG CTCGGCGCGA TTCTCCTGAC CGCAGCCCAG
TCCCGCGGCC CGCTCACTCC GTCCAGCGGT CCCGCCGCCG CCGCGGCGGC GGCCACCGCG
CCCGTCAGCC CCAGCTTCGT CACCGTCGCC GCGGCCACCC CGATCGACGC GGCGCTGCCC
ACGGCGGCAC CGGGCACCGT CGTGGTCCAG CTGCCGGCCA ATGGCGTCTA CGACTCGCTG
TGGCGGATCG CGGACCGCTG TCTGGGCGAC GGCGCCCGCT GGCCCGAGAT CTGGGCGCTC
AACCAGGGCG TCGTGCAGGC CGACGGCCGT GCGCTGACCC AGCCGGGCCT GATCCGCCCC
GGCTGGGTCC TGACCCTGCC CACCCAGCCC GCACCTGAGG CCCCGCCGAC GGACCCGCCC
CGCTCCAGCC CGCTGCCCTC GGCGCCGCCC GTGCCGGGAC CGTCCTCGAC TGCCCCAGGA
CCGACGACGA CCCCGCCGGC CGCACCCACG ACCCCCGCGC CCTCCACGAC CTCGCCGGGC
CCGCCAACAC CCGGCCCGTC ATCCGCAGCC GGCGGCCCGA CAACCGTTCC GACCTCGCCG
GCTCCCACAG CTCCGCCGAC CACATCGGCT GTGCCCGCCC CGCGCCCGCC CGCGCCGGCC
CAGCGGCCGG GGGTGCAGTT CCCCTCGGGC GGCTACCTCG GGTTGGGCGC GGTCGCGCTG
CTGGTCGTCG CGCTGTTCAC TGTGCGGCTG TGGCGCCGCC GGCACTACAT CCCTGGCAGC
GGCCGACGCG ACGACCTGGA GGAGGCGCCG GTCATCCGCC AGCTCGCCGT CGCCTACAAC
ACGGCCACCG CCGAACGCGA CGCCGACGGC GAGCTGGTCG TTGTCCGCCC GCCGGGCGAC
CCGCACATCA TGGGCCGCCG CCACGCGGCG GCCACCGCCA ACGCCCACGC CGCCCCACCC
GGCACCCGGG TTGTTGGCAC GACCGGCGAC AGCCAGCCGC TCGCGCTCGA CCTGGCCGCC
ACCCGCGGCC TCGGGCTAAT CGGGCCCGGT GCGGACGCCG CGATCCGCGC TCTGCTCGTC
GCGGTGCTCG CCGACCGTCA CCAGCCCGCC GCCGCCCCCG TCGAGATCCT CATCCCGGCC
GCCGACGTGC GGCGGCTGCT GGGGGAGGAC AGCACCGCCG CAGCGCCGCA GCGGCTGCAC
GTCGTCGCCG ACCTGGCCAC GCTGCTGGAC CGCCTCGAAG CCGACGTCGT CACCCGGGCA
CGGCGAGCCG CGGCCGGCGA GGACCCGAGC CGTTCCGCCC TGGTCGTCGT CGCGGCCCCC
GACCAGACCT CGGATCGCCG GCTACAAGCC GTGCTCGACA ACGGCTCCCC GCTCGGTCTC
GTCGGCATCC TCTACGGCCA GTGGCGCCCC GGAGCGACCG TCCGGGTCCG ACCCGACGGG
GTGGTCGGCG CCGCCAGCCC CGACATCGCC GCCGCCCTGA TCGGCAGCCG TCTGTTCACC
CTGCCGGAGA ACGACACCGC CCAGCTGCTC GACCTGCTCG CCGACGCCGA TGCACCGGCC
GCCAACCAGG AGGAGTTCCG GCGGGCAAAC CCTACCCAGG GGCCCCCGCC CCCGCCTCCC
ACCTCCGCTC CGCCCCTCGA TGACCCCGCA GTCACGTCTG CGGCGACGCC GCCCGGAGCC
CGGCCAAGAC GAGACACGCC GCCGGACCCA GTCGAGCCGC CGCCTCCCGG CGGCGGTGGA
GCAGGCGCAG CGGAGCCCGT TGACGCAGCA CCGCCGCCGG CGCCCGCCGC GAGCGCGCCG
CGGGGGGCAC AACGCCCACC GCAGGCGACC ACGCCGTTGC TGCTCACCCT GTTCGGCCGG
CTGCGGCTGC TGTACCGACC GGCATCGGAC GGCGACTACC AGCCTGTGGA CGGCATCGGG
GGCCCGAGCC GGGAGATCCT GGCCTATCTC GCCGCCCATC CCGACGGTGC CCGCCGCCGG
GTCATCATCG ACGCGGTCTG GCCCGAGGAC GGCAAGTCCC AGCGGCTGCG GGACAACCGG
TTCTACGCCG CCATCAGCCA GCTGCGCCGC GCCCTTATCG CCGCCACCGG CGGGGCGATC
GACGACGTGT TCGACCACGA CGACCGACTC TGGCGGCTGC GCCGTGACCT GATCACTGTC
GACCTCTGGC AGGTCGACGA GGCCCTCGCC GCGCGGCGGC GCGCGACGAC CACCGCCGAC
GAGCTCGCCG CGGTCCTCCC GCTGGCTGCC ACCTACACCG GCCACCTGTC CGACGACATC
GCCGGTACCT GGGCCGAAAC CCACCGCGAG AACCTGCGCC GCCAGGTCTC CGACGCGCTC
GCCAGCATCA CCGCCACGGT CGGCGAGGAC AACCCGCAGC GCCTGGAGCT GTTGGAGGCG
CAGCGCCGCC TCGACCCCTA CAACGAGCAG CTCTACTGCC AGATCGCCGC CACCCAGGCC
CGTCTCGGCC AGCACGACGC CATCGCGGCC ACCTACCGCC AGCTGGTCGC CGCCCTCGCC
GAGATCGGCG AGCGGCCCAC CCCCAACACC GATCGCATCT TCCAGGCCGT AATGCAGCCC
GGACCGCCCG GTGCGCGTTC AGCCTGA
|
|---|
| Protein sequence | MSRPPARRRP RPARRRGTAG LLLVGRLLRA LVALAALVAL VGGLPWALWH FVGWPLPHHV
PSWAEVSARL TGPMDDTLLL DVLAVLLWPL WFAFAVSVTL AVPEVVRQAR WPGHGVALPA
RGMRGFATFL LGAILLTAAQ SRGPLTPSSG PAAAAAAATA PVSPSFVTVA AATPIDAALP
TAAPGTVVVQ LPANGVYDSL WRIADRCLGD GARWPEIWAL NQGVVQADGR ALTQPGLIRP
GWVLTLPTQP APEAPPTDPP RSSPLPSAPP VPGPSSTAPG PTTTPPAAPT TPAPSTTSPG
PPTPGPSSAA GGPTTVPTSP APTAPPTTSA VPAPRPPAPA QRPGVQFPSG GYLGLGAVAL
LVVALFTVRL WRRRHYIPGS GRRDDLEEAP VIRQLAVAYN TATAERDADG ELVVVRPPGD
PHIMGRRHAA ATANAHAAPP GTRVVGTTGD SQPLALDLAA TRGLGLIGPG ADAAIRALLV
AVLADRHQPA AAPVEILIPA ADVRRLLGED STAAAPQRLH VVADLATLLD RLEADVVTRA
RRAAAGEDPS RSALVVVAAP DQTSDRRLQA VLDNGSPLGL VGILYGQWRP GATVRVRPDG
VVGAASPDIA AALIGSRLFT LPENDTAQLL DLLADADAPA ANQEEFRRAN PTQGPPPPPP
TSAPPLDDPA VTSAATPPGA RPRRDTPPDP VEPPPPGGGG AGAAEPVDAA PPPAPAASAP
RGAQRPPQAT TPLLLTLFGR LRLLYRPASD GDYQPVDGIG GPSREILAYL AAHPDGARRR
VIIDAVWPED GKSQRLRDNR FYAAISQLRR ALIAATGGAI DDVFDHDDRL WRLRRDLITV
DLWQVDEALA ARRRATTTAD ELAAVLPLAA TYTGHLSDDI AGTWAETHRE NLRRQVSDAL
ASITATVGED NPQRLELLEA QRRLDPYNEQ LYCQIAATQA RLGQHDAIAA TYRQLVAALA
EIGERPTPNT DRIFQAVMQP GPPGARSA
|
|---|
| |