Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_1239 |
Symbol | |
ID | 3903538 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 1483623 |
End bp | 1484402 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637878573 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_480346 |
Protein GI | 86739946 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.198291 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATCTTC AGCTGGCGGG CAAGGTGGTG CTGGTGACCG GCGGCTCGAA CGGGCTGGGA GCCGCCCTGG TGCGGACGCT GGCCGCCGAG GGGGCGCGGG TGGCCTTCTG CGGGCGCGAC GAGACGCGGC TGCGGGAGGT CGCCGGGCAG GCGCAGGCCG GCGGTGGCGA GGTTCTCGCC GTACCTGCCG ATGTGACCAG CATCACTGAC CTCGAACGTT TCGTCGCCAC CGCCGTCGAC CGCTGGAACG CCGTCGACGC CCTGGTGAAC AACGCCGGCG CCAGCGCGGG CGGTACGTTC GAGAACCAGA CCGACGAGGT CTGGAACGCC GATCTGGAGC TGAAGCTGCA CGCGGCGATC CGGGCCTCCC GGCTGGTGTT GCCGTACCTG CGGCGCGCGG GCGGTGGCGG CATCGTGAAC TCACTGTCCG TGGCGGCCAG AGCCCCCAGC GCCGGTTCCA CCCCGACCTC CGTCACCCGG GCCGCGGGCC TCGCGCTCAC CAAGGCCCTG TCCAAGGAGC TCGGCCCGGA CCGGATCCGG GTCAACGCGG TGCTGATCGG CCTGGTGGAG AGCGGGCAGT GGGATCGGGC GGCGGCCCGA GAGAACATCA CGGTCGACGA GCTGTACGAA CGGATGGGGC GGACCTCCGG AATCCCGCTC GGTCGGGTGG GCCGGGCCCA GGAGTTCGCC GATCTGGTCG CGTTCCTGCT CTCCGCGCGG GCCGCCTACA TCACGGGTGC GACGATCAAC CTCGATGGCG GCCTCAGCCC GGTAGCCTGA
|
Protein sequence | MDLQLAGKVV LVTGGSNGLG AALVRTLAAE GARVAFCGRD ETRLREVAGQ AQAGGGEVLA VPADVTSITD LERFVATAVD RWNAVDALVN NAGASAGGTF ENQTDEVWNA DLELKLHAAI RASRLVLPYL RRAGGGGIVN SLSVAARAPS AGSTPTSVTR AAGLALTKAL SKELGPDRIR VNAVLIGLVE SGQWDRAAAR ENITVDELYE RMGRTSGIPL GRVGRAQEFA DLVAFLLSAR AAYITGATIN LDGGLSPVA
|
| |