| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1150 |
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| Symbol | |
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| ID | 3903578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 1366651 |
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| End bp | 1368555 |
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| Gene Length | 1905 bp |
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| Protein Length | 634 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 637878482 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_480258 |
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| Protein GI | 86739858 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGACAC ATCATTCTGT TGAGGGCCAC TCCACAAAGG CACCCTCATC TACCAAGAGA
GATAAAATAT CTTATTTCTG CCCTCGATCT AGTGTCCAGC GCGGCCACCG AAGCGACGCG
GGCGAGGGCA ATGAGAACAC CGAGGGGAAC GAGGGCGCCG AGGCCAGCAA GGACAACAGC
GCGGGAGCCG GCGACGCCGG GGAACTGGAT CGCCCGAATG GCGCCGACGG CCGGGGGCGG
TCGCCCGGCC AGGACGGGAC GTGGTGGCGC CGGGCCGTCC TGTACGAGGT GTACCTTCGC
AGTTTCGCCG ATTCCGATGG CGACGGGATC GGCGATCTGG AGGGGCTACG GCGGCATCTG
CCCGTGCTGG CGGAACTCGG CGTCGACGCG ATCTGGATCA CGCCCTTCTA CTCGTCCCCC
ATGGCCGATC ACGGGTACGA CGTCGCCGAC CATCGCGGCG TGGATCCGCT CTTCGGTGAC
CTCGCGGACC TCGACGCCGT GCTCGCCGAC GCCGCCGAGA CCGGGCTCGC CGTGCTGATC
GATCTCGTGC CGAACCACTC GAGCTCGGCG CATCCGGCGT TCCAGGCGGC GCTCGCGTCC
GCGCCGGGCA GTCCCGAGCG GGGGCTCTAC ATCTTCCGCG ACGGCCGAGG CCCCGGCGGC
GAGCAGCCTC CGAACAACTG GGAATCGGTG TTCGGTGGAT CGGCCTGGAC GCGGGTGGCG
GACGGCCAGT GGTACCTGCA CCTGTTCGAC GCCGAGCAGC CCGACTGGAA CTGGGATCAT
CCCGCCGTCC GCGCGGACCA TGCCGCGACG CTGCGGTTCT GGCTCGATCG AGGGGTCGAC
GGGTTCCGGA TCGACGTGAC CCACGGGCTG GTGAAGGACA CCGAGCTACG GGACAACCCG
CCCGGCGCCC GGTTGGCTCC GGACAGCGGG TTCCGCGAGG AGCACGAGCC CCGGGTCTGG
GACCAGGACG GGGTGCACGA GATCTACCGC GAGTGGCGCG CGATCACCGA CGAGTACACC
GCCCGCGACG GGCGTCCCAG GGTCCTGATC GGGGAGACCT GGGTGCGCGA CCCGGCCCGG
CTCGCCCGCT ACGTGCGACC GGACGAGCTG CACCTGACGT TCTCGTTCTC CCTGCTGAGC
ATCCCCTGGT CGGCGGCGGC CTGGCGGGCC GCCATCGACG CCGAACGCGC CGCGCTGACG
GCGGTCGGCG CGCCGGGCAC CTGGGTGCTC GCCAACCACG ACGTGGTGCG GCCGGCGACC
CGTTACGGCG GCGGTCCCAC GGGGACCCGC CGCGCGCGCG CCGCTCTGCT CACGCTGCTC
GCGCTGCCCG GCACCGCGGT GCTGTACCAG GGCGACGAGC TGGCGCTGCC GCAGGCCGAG
GTGCCGCCTG CCGCCCGTCG CGACCCGATC TGGACGCGGT CCGGGGGGAC GTCGCCGGGC
CGGGACGGCG CCCGGATCCC CCTGCCGTGG TCGGGGGACG CGCCCCCCTA CGGATTCACC
TCGGCCGGCG CCGACCCGTG GTTGCCGCAA CCCGCCGACT GGGCGGACCT CGCGGTCCTC
GCGCAGGCGG CCGACCCGAT GTCGACCTGG CTGCTTGTGC GCAGCGCGCT CGCCCTGCGC
CGCGCCCTCC CCCACCTGCG TGGCGACGAC CTGCGCTGGC GGAACGACTC CCCGGCCGGA
TGCCTGGCCT TCGACCGCCC CGCGCCGGCA GGCTCGTCGG TGCCCCCGAC CCCGCCCACC
TCGGTGGGGT CGGCCAGTAT GACATGCGTG ACGACGACCG AGGGGGAGGC GACGATTCCG
CTGCCCGGAC GGCTGGTGCT CGCCAGCGGA CCGGTGGGGT ACGACGGCGC GACCCTGACG
CTGCCCCCCG ACACGACGGC GTGGATCGCA CCCCGCGACG GCTGA
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| Protein sequence | MRTHHSVEGH STKAPSSTKR DKISYFCPRS SVQRGHRSDA GEGNENTEGN EGAEASKDNS
AGAGDAGELD RPNGADGRGR SPGQDGTWWR RAVLYEVYLR SFADSDGDGI GDLEGLRRHL
PVLAELGVDA IWITPFYSSP MADHGYDVAD HRGVDPLFGD LADLDAVLAD AAETGLAVLI
DLVPNHSSSA HPAFQAALAS APGSPERGLY IFRDGRGPGG EQPPNNWESV FGGSAWTRVA
DGQWYLHLFD AEQPDWNWDH PAVRADHAAT LRFWLDRGVD GFRIDVTHGL VKDTELRDNP
PGARLAPDSG FREEHEPRVW DQDGVHEIYR EWRAITDEYT ARDGRPRVLI GETWVRDPAR
LARYVRPDEL HLTFSFSLLS IPWSAAAWRA AIDAERAALT AVGAPGTWVL ANHDVVRPAT
RYGGGPTGTR RARAALLTLL ALPGTAVLYQ GDELALPQAE VPPAARRDPI WTRSGGTSPG
RDGARIPLPW SGDAPPYGFT SAGADPWLPQ PADWADLAVL AQAADPMSTW LLVRSALALR
RALPHLRGDD LRWRNDSPAG CLAFDRPAPA GSSVPPTPPT SVGSASMTCV TTTEGEATIP
LPGRLVLASG PVGYDGATLT LPPDTTAWIA PRDG
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