Gene Francci3_1116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_1116 
Symbol 
ID3905458 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand+ 
Start bp1329563 
End bp1330192 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content68% 
IMG OID637878448 
ProductTetR family transcriptional regulator 
Protein accessionYP_480225 
Protein GI86739825 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.863597 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCCCGAG AGGAGAGTCG GGAGCTGACC CGCGAGAAGC TGCTGCGCTC GGCGGCGGAG 
CTGTTCGCCG AGCGTGGCCT TGCCGGCACA TCGGTCGAAC AGATTGTCGA GCGTGCCGGT 
TTCACGCGAG GCGCCTTCTA CGGCAACTTC GACGGCAAGC ACGAGCTCGT GCTCGCCCTG 
CTGGAGAAGC GCACAGAGCG TGAGCTGGAG GAGCTGCGGG CGCTGGGCCG TGACGCCGGC 
TCGTTCGAGG GCATGGTCGA GCAGTTCCGG GCCTGGCATC GTGAGCGTGA CCGTCACCTC 
GCGAGCTGGC TTGTGCTGCG CACCGAGCTG TGGCTCTACG GCCTGCGCAA CCCGGGCGTC 
CTGCCGACGC TGACCGACCG GGAGGCGCGG ACGCGGACGA TCATCGCGGA GGCGCTCGCC 
CGCGACTTCA CGTCTCGTGA CGCGTCCCCA CCTGCTCCGG TCGAGGTGCT CGCGTTGATA 
GTGCACGCGC TTGACGACGG CCTGGCGATC CAACGGGTCC TGTCGCCCGA GAGCAGCCCG 
GACGACGCGG CAGTCGACGC GGTGGACTTG TTACTGCGGT CGTGGGTCGC GTTGGGTCGC 
GAAATAGCTG CGGAGAAAGG GAACGACTGA
 
Protein sequence
MSREESRELT REKLLRSAAE LFAERGLAGT SVEQIVERAG FTRGAFYGNF DGKHELVLAL 
LEKRTERELE ELRALGRDAG SFEGMVEQFR AWHRERDRHL ASWLVLRTEL WLYGLRNPGV 
LPTLTDREAR TRTIIAEALA RDFTSRDASP PAPVEVLALI VHALDDGLAI QRVLSPESSP 
DDAAVDAVDL LLRSWVALGR EIAAEKGND