| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0362 |
|---|
| Symbol | |
|---|
| ID | 3905421 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 423484 |
|---|
| End bp | 425523 |
|---|
| Gene Length | 2040 bp |
|---|
| Protein Length | 679 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637877691 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_479478 |
|---|
| Protein GI | 86739078 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5617] Predicted integral membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.745599 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGTGTC GCGGGTGGAC CGTCACCCCA TACCGCCAAA TCATCACGTT ATGTAGCTAC
GGAGGCAATC AGGGCGACTA TGGTCGTGAA CGCCCCGTAC ATCCCGTCCG CAGGGGGCGG
ATCGGGGTCT ACGGGCACAC GAGGGGGGCC GTCGTGACGC AATCCGAAAC CGCTGGGGCC
GCCGAAGGCA TCTCCGGTCA CGGTACCGAT CATGCTCCCG GCCACAGTGC ACGCCCGGCG
CCGGAGATCC GGTCCTGGCG GATCCAGGTT CCTCCGCCGC TGTTGGTCGC GGTGGGATAC
CTGGCGGTGG CCATCGGCAT CTTCCACTCC GCGTGGGGGA ATCTCGGGAA CGTCTCCTAC
GGCGGCAACG ACGCCATGCT GTTCGCCTGG TTCCTCGGCT GGACGCCGCA CGCGCTCGCC
GACGGGCTCA ACCCGTTCCT GACGCACCAC ATCAACGCCC CCGACGGGGC CGACGTCCTG
TGGAGCACAC CCGTGCTCCT ACTGGGCGCG CTGGCCGCAC CGATCACGCT GCTGGGCGGC
CCCGTGACCA CGCTGACGGT GCTGCTGACT CTGGCGCCCG TGATCAGCGG ATTCGCCCTG
TTCTGGGTGC TGCGCCGATG GGTACGTCCG GGACCGGCGG CGCTGGCGGG CCTGCTGTAC
GGCTTCGGAC CGCACATGAT CGGCGCGTCC TACGGTCATC TGCATCTGAC CTTCGCGCCG
TTCCCGCCGG TTCTCCTGCT GCTCCTCGAC GATCTCGTGG TCCGCGGGCG GGGGCCGCGG
CGCACCGGCG TCCTGCTCGG CCTGGCGATC ATCGCCCAGG CGCTGATCGG CGAGGAGCTG
CTCGCCACAT CCGCGCTGGC AGCCACGTTC GGCCTTGTGA TCCTCGCCGT ACGTCATCGC
GATCGGATCC GATCGCGGCT ACGACCGGCC CTGAGCGGCC TCGCCACGGC CGGCGGGGTC
GCCGCGGTCG CGCTCGCCTG GCCGCTGGGC ACCCAGTTCC TGGGTGCCCA GCGGATCCAT
GGCTCGATCC AACCCGATGG AATCGCCGTG ACGGATCTGC TGACCTTCGT CACGCCGACG
CCCATGCAGG CCGTCGCCCC GGACGGCGCG CTGCGCCACA GCCTCGGTTT CACGGGGAAC
GCGGTCGAGG TCAGCGGTTA CCTGGGCGCT CCACTGATCG TCGTGGTCGT CGTGGTCGTC
GTCGCGACGG GCGGCGCGCG CCGGCCTCCG CCGGTCGGGG TGTTCGCTCC GCTCGGCGTG
GTCATGGCCG TGCTCTCACT CGGTGGTCAC CTGCATGTCG ACGGCCGGGA CACCGGCGTT
CCCCTCCCGT GGCTGCCCCT TCAGCACGTG CCGGTACTCG GCAACGTGTT GCCCTCCCGC
CTGGCGTTAT ACGTGATGAT GTGCGCGGCC ATCGTGGTGG CGACCGGGCT TGACCGGCTG
GCGTCGGATC GGACGGTGCC CGCCGATCCG GACCCCGGAC GGGAGATCCC CGCTCGGGTC
CGGACCAGGA CCGTCCGGCT GGGAGCCGGC CTGCTGACAC TCGCGGCCCT GGTGGCGCTC
GTCCCCGCCC CGATGCTCAC CACGTCGATG ACGACGCCCG CGTTCTTCAC CAGTGACGGG
GTGACCCTGA TTCCGCAGGG TGCCACCGCA CTCGTCGTCC CCTTTCCCCA TCCCCAGAAC
GCCGAGGCCA TGCTGTGGCA GGCCAGGGCG AACTTCCGGT TCGTCATCCC CGGCTGCTAC
TGCACCGTCC CCGGGCCCGA TGGCCGGGCG GCGTTCCACA GCCCGCCGGA CGCGCTGACG
TCCGCCCTCA TCGACATCGA CAACGGCGCG ACGACCGCCG CTGCCATGTC GGGATCGCCG
CGGCTGCGGG CGGCCTACAA ACGGCTCGCC CCGGACGCCG TCGTGCTGGG ACCGGCGCGG
CGGACCGCCG AGCTACGCAC GCTGCTGCGC GAACTCGTCG GCGCGGCTCC CAGCCGGGTC
GGCGGGGTCG ACCTGTGGCT CCCAGGCCGG GAAGCCGGAC GTTGGCCTCG CCACCGGTGA
|
|---|
| Protein sequence | MPCRGWTVTP YRQIITLCSY GGNQGDYGRE RPVHPVRRGR IGVYGHTRGA VVTQSETAGA
AEGISGHGTD HAPGHSARPA PEIRSWRIQV PPPLLVAVGY LAVAIGIFHS AWGNLGNVSY
GGNDAMLFAW FLGWTPHALA DGLNPFLTHH INAPDGADVL WSTPVLLLGA LAAPITLLGG
PVTTLTVLLT LAPVISGFAL FWVLRRWVRP GPAALAGLLY GFGPHMIGAS YGHLHLTFAP
FPPVLLLLLD DLVVRGRGPR RTGVLLGLAI IAQALIGEEL LATSALAATF GLVILAVRHR
DRIRSRLRPA LSGLATAGGV AAVALAWPLG TQFLGAQRIH GSIQPDGIAV TDLLTFVTPT
PMQAVAPDGA LRHSLGFTGN AVEVSGYLGA PLIVVVVVVV VATGGARRPP PVGVFAPLGV
VMAVLSLGGH LHVDGRDTGV PLPWLPLQHV PVLGNVLPSR LALYVMMCAA IVVATGLDRL
ASDRTVPADP DPGREIPARV RTRTVRLGAG LLTLAALVAL VPAPMLTTSM TTPAFFTSDG
VTLIPQGATA LVVPFPHPQN AEAMLWQARA NFRFVIPGCY CTVPGPDGRA AFHSPPDALT
SALIDIDNGA TTAAAMSGSP RLRAAYKRLA PDAVVLGPAR RTAELRTLLR ELVGAAPSRV
GGVDLWLPGR EAGRWPRHR
|
|---|
| |