| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1560 |
|---|
| Symbol | |
|---|
| ID | 5451775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | + |
|---|
| Start bp | 1698601 |
|---|
| End bp | 1699632 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640875335 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_001411060 |
|---|
| Protein GI | 154250235 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2730] Endoglucanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000321145 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA AAATATTGAA TGTTTTGCTT GGTTTTGCTT TAATTTTTCT TATGAATGGT
AATTGCAAAG CTGACCAAAG TGTGAGTAAT GTTGATAAAA GTAGTGCTTT TGAATATAAT
AAAATGATTG GACATGGGAT AAACATGGGG AATGCTTTAG AAGCCCCTGT AGAAGGTTCT
TGGGGAGTTT ATATTGAGGA TGAATATTTT AAAATAATAA AAGAAAGAGG CTTTGATTCT
GTAAGGATTC CTATCAGATG GTCTGCACAC ATTTCTGAGA AGTATCCTTA CGAAATTGAT
AAATTCTTTT TAGACAGAGT GAAACACGTT GTCGATGTCG CGTTGAAGAA TGATTTGGTT
GTAATAATCA ATTGTCATCA TTTCGAGGAA TTATATCAAG CCCCTGATAA ATATGGTCCT
GTATTAGTTG AAATTTGGAA ACAAGTTGCC CAAGCTTTTA AAGATTATCC AGACAAATTG
TTCTTTGAAA TATTTAACGA ACCAGCTCAA AATTTGACTC CGACTAAGTG GAATGAGCTT
TATCCAAAAG TTTTAGGTGA AATTCGAAAA ACGAATCCAT CAAGAATTGT AATTATAGAC
GTTCCAAATT GGTCGAACTA CAGCTACGTA AGAGAGTTAA AGCTTGTTGA TGATAAAAAT
ATAATTGTTT CATTCCATTA TTACGAACCT TTTAATTTTA CTCACCAAGG TGCTGAATGG
GTTAGTCCAA CGCTTCCAAT TGGCGTTAAA TGGGAAGGAA AAGATTGGGA AGTGGAACAG
ATTAGAAATC ATTTCAAATA TGTTAGTGAG TGGGCAAAGA AAAACAATGT TCCGATATTT
TTAGGTGAGT TTGGCGCATA TTCAAAAGCA GATATGGAAT CACGGGTGAA ATGGACCAAA
ACTGTTAGGA GAATCGCTGA AGAATTCGGA TTTTCGCTTG CATATTGGGA ATTTTGTGCG
GGGTTCGGGT TGTACGATAG ATGGACAAAA ACATGGATAG AACCTCTTAC TACCTCTGCA
CTTGGAAAAT AA
|
|---|
| Protein sequence | MKKKILNVLL GFALIFLMNG NCKADQSVSN VDKSSAFEYN KMIGHGINMG NALEAPVEGS
WGVYIEDEYF KIIKERGFDS VRIPIRWSAH ISEKYPYEID KFFLDRVKHV VDVALKNDLV
VIINCHHFEE LYQAPDKYGP VLVEIWKQVA QAFKDYPDKL FFEIFNEPAQ NLTPTKWNEL
YPKVLGEIRK TNPSRIVIID VPNWSNYSYV RELKLVDDKN IIVSFHYYEP FNFTHQGAEW
VSPTLPIGVK WEGKDWEVEQ IRNHFKYVSE WAKKNNVPIF LGEFGAYSKA DMESRVKWTK
TVRRIAEEFG FSLAYWEFCA GFGLYDRWTK TWIEPLTTSA LGK
|
|---|
| |