Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fnod_1340 |
Symbol | |
ID | 5452800 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Fervidobacterium nodosum Rt17-B1 |
Kingdom | Bacteria |
Replicon accession | NC_009718 |
Strand | + |
Start bp | 1440381 |
End bp | 1441805 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 640875116 |
Product | protein-export membrane protein SecD |
Protein accession | YP_001410844 |
Protein GI | 154250019 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGAAGTG ACCGTGTAAG ACTCATAATT TCATTAGCAC TACTGGTCGC AGCCGTTGTG GCATTGTTAT TACCAGGGGG AAGACAAGCA ACAGGTATTG CTAAGCTTTT CAGTAGAATC AAACTCGGTT TGGACCTCAG CGGTGGTGTA AGGCTTGAGT ACAGAGTTGA TATTGAAAAA GGTGTAGAAA ATCCAAGTGC TGTAGTTGAC GATGTGTGGA CAGTTCTCAG AAATAGGCTT GACTCGGCTG GATATACGGA AGCAGTAGTA AAGAAAAGTT TCAGGGAAAA TAATTCATTT ATCATAGTTG AAATTCCTGA TGCAACTGAC ACATCATTTG CTGAAAAATT GGTTGGTTCA ACCGGTCTTT TGTGGTTTGG TCAGGCAATC GACGAAAGAG ATTACGATCC AACTACTAAT CCTGATGATG TGAACCTTGC TACTAGGGAA GGAGCACAAT GGTATTCAGA TAAAGACGGA AAAAAATGGT ACTTAATAAA GAAAGAAATC AATAACAGAA AAGATCTTGT CCTTTCTGGT CCAAGAATTT CCGAAGCAGT TCCTACTGTT GACCAAAAAG GTGTTGCAAA TTATGTTGTA TCGTTCACCT TGGCAAGAGA ATACGTTGAA GTATTTAAAA ATATAACAAA AGAGCTTTAT GTACCAGAAC AAGTCCTCAA TAGTGGTACG ACACAATATC AAATGGCTTT AAAGAAGAGA CTCGCAATAG TACTTGATGA CAAAGTTCAA TTTGTAGGAT TTGTTGTAAG CCCAATAGAA GATGGTAAAG GACAGATTAG AGGTAATTTC ACATTTGACG AAGCTAAAGA GCTTGCAGCG ATTTTGAGAA GTGGGGCACT ACCTGCAAGA CTTGAGAAAA CTTCTGCAAG CCTCGTTTCA CCACTTCTTG GTAAAGATGT ACTTAAACAA TCTTTAAACG CAGGTCTAAT TGGCGCGGTG TTAGTAATTA TTTACATGCT TGCTTTCTAT GGTGTTATGA GCTTTGTTGC AGTTATAGGT ATATTCTACG CACTTGCACT AATATTCGGT TTCTTGGCCG GTACGGGCGC AATATTAACA TTACCAGGTA TCGCAGGTAT AATCTTTACA ATAGGTACAC TTGTTGATGG AAATATAATT ATTTACGAAA GGATAAAAGA AGAAATCAGA GGTGGAAAAA CACCAAAAGC AGCTATAGAA GTTGCATTTT CAAGATCTTT CTGGACACTC TTTGACGCAA ACCTAACGAC TATAATCGCA GCTCTCTTCC TTTACTACTT TGGTACGGGA ACAATAAAAG GCTTTGCTAT AACAACAATC GTTGGTATCT TCTCAGCAAT GTTCATGAAT TTGGTATTCA GCAAATTCTT ACTTGACGCA ATGGCTGGAG CAATTAGAGT GAGAAAGACA GGGGGTGCAC AGTAA
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Protein sequence | MRSDRVRLII SLALLVAAVV ALLLPGGRQA TGIAKLFSRI KLGLDLSGGV RLEYRVDIEK GVENPSAVVD DVWTVLRNRL DSAGYTEAVV KKSFRENNSF IIVEIPDATD TSFAEKLVGS TGLLWFGQAI DERDYDPTTN PDDVNLATRE GAQWYSDKDG KKWYLIKKEI NNRKDLVLSG PRISEAVPTV DQKGVANYVV SFTLAREYVE VFKNITKELY VPEQVLNSGT TQYQMALKKR LAIVLDDKVQ FVGFVVSPIE DGKGQIRGNF TFDEAKELAA ILRSGALPAR LEKTSASLVS PLLGKDVLKQ SLNAGLIGAV LVIIYMLAFY GVMSFVAVIG IFYALALIFG FLAGTGAILT LPGIAGIIFT IGTLVDGNII IYERIKEEIR GGKTPKAAIE VAFSRSFWTL FDANLTTIIA ALFLYYFGTG TIKGFAITTI VGIFSAMFMN LVFSKFLLDA MAGAIRVRKT GGAQ
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