| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_0142 |
|---|
| Symbol | |
|---|
| ID | 5452498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | + |
|---|
| Start bp | 143768 |
|---|
| End bp | 145669 |
|---|
| Gene Length | 1902 bp |
|---|
| Protein Length | 633 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 640873889 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001409666 |
|---|
| Protein GI | 154248841 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1262] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0534916 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTTT CTGTTTTTTT TAAAATTTTA GTTTTTATAG TGTTAATATC GAACTCATTT
GCATTTTCTG AGCAACTGGT TTATAAGTCA GGCGATTCCA TTGATGGAAA ACTCGTTGAA
CTATTTGAGA ATTATATTGT TTTTGATACA TCATTGGGAC GAATATTTGC AATTATTGAT
CAAGTAAAGT TTGTTATTTT TAATTCTTCT ATTCAACCTG AAGAAGGCTT TGCGTCATTA
TCAGGGAAGA AAATTAAAGG TTATGTAACT GACATCAAAG GCAATTATAT AATCGTTACA
ACCAATTTTG GAAAGATGAA ATTTGTAAGA ACGAATGATA TTGATTATCT ATCATTTGAA
AAAGTTGAAT TTCAAAGTTT ACCAGTTTTT GATGGACTTA ATATCGATTT AAGTTTATCA
AATATGTACA CTGTATTTCT TTCTTCTGGA GACGTTTTCA CTGGTCAAAA ATTATCTTCA
GATGATAAAT ATATTATCAT TTCTGATAAT CAGGGAAATG AAATCTACAT TGAAAAAGTT
TTTGTTGAGA ATTTGTACAT ACCTATTAGC AATGCAAATG GATATGAATT GTTAATTCTA
AAGAATGGAA GACGGTTGTA TGGAAAGGTT ACAAAAGTTG ATGAAAATGA TTTAGAAGTT
TCAGGCGAAT GGGGTAAATT GAAAGTTAAA CTTTCTGAAG TTGTTTTTAC AACTTATAAA
CCAGGCTATG AAAAACTTCA AACCTCATCA GAAGTTATCT ATGACAAAGA TGGAGTAGCT
TCTATGGTAG TTAAAACTCC GTTAAAAGTT AACAATAAAG AAGTGAAAGT TATAAAAGTT
TATCCACAAG AAATTGTTGA TCCAAGAACA GGTGTAACTT TTGTATTTAT ACCAGGCGGT
ACTTTTAAAA TGGGTGCAGA TACTTCTTGG GGGAAAGTTG AAGAAGATGA ATTGCCGGCA
AGAAATGTTT ATATTTCTGG GTTTTATATA TCAAAATACC CAATTACAGT AAAGCAATAT
CTTGATTTTC TTAGAGCAGG TAAGAGTTCA AATGTTCTTT CTGGGAAAAA TATTACTCCC
GTGACGATAG ATTTCCTTGG TTCTAAATTT ACAGTAGGTT ATACAGCAAA CAAAAGCTCT
TATGACTTTC CTATAACTAA CATAAACTGG ATCTCTGCAA AGGCTTATTG TGACTGGGCT
GGTTACAAAT TACCGACTGA AGCTCAGTGG GAAAAAGCTG CAAGAGGAAC AGATGGAAGA
ATTTATCCAT GGGGAAATGG TAAGGCTACG AAATTTAATG ACGGGAAAAA AGAATACAGC
GTTAAAGCGT TTGAAGATGT AGATGTTTCA CCCTATGGAG TTGTAAATAT GTTTGGGTAT
CCAATAGAAT ATTGTATGGA TTATTATAGT AAGGATGCTT ATAAAAATTT ACCCAACGAA
AATCCGATAA ATACTTCAGG GACTTTAGTT GTTGGAAGAG TTGGAGCTAT AGCAAATAGA
ATTACCGATA GAGTTCCAGT TAGTCCATCT GAGGCAAGGA GTGATTTTAC ATTTAGAGTT
GTTGTTGAGG CAGATTCGAT ATTTTCTGTC ATCAACAAAC CAATGGATAA CAAACTTATG
GGAGTTACAT GGTTTGTTGT AAATGATAAA GTGAAAAGTA CATATGGAGT TAAAGCTGAT
GGCCTTTACG TTGCTTATGT TGAGGAAGGA TCACCCGCTC AAATTGCAGG TTTGAAAGTT
GGCGATGTGA TAACTTCTAT TGACCAAAAG TCGATTAAAA ATCCAGATGA TGTTACGAAA
ATAGTTGCAA ATAAGAAGAT AAACGACGAG ATAACTGTAA CTGTTAATAG AGCTGGGCAA
ATGGTAAATA TTAAATTAAA ACTCGGTGTT TGGAAGTTCT AA
|
|---|
| Protein sequence | MRFSVFFKIL VFIVLISNSF AFSEQLVYKS GDSIDGKLVE LFENYIVFDT SLGRIFAIID
QVKFVIFNSS IQPEEGFASL SGKKIKGYVT DIKGNYIIVT TNFGKMKFVR TNDIDYLSFE
KVEFQSLPVF DGLNIDLSLS NMYTVFLSSG DVFTGQKLSS DDKYIIISDN QGNEIYIEKV
FVENLYIPIS NANGYELLIL KNGRRLYGKV TKVDENDLEV SGEWGKLKVK LSEVVFTTYK
PGYEKLQTSS EVIYDKDGVA SMVVKTPLKV NNKEVKVIKV YPQEIVDPRT GVTFVFIPGG
TFKMGADTSW GKVEEDELPA RNVYISGFYI SKYPITVKQY LDFLRAGKSS NVLSGKNITP
VTIDFLGSKF TVGYTANKSS YDFPITNINW ISAKAYCDWA GYKLPTEAQW EKAARGTDGR
IYPWGNGKAT KFNDGKKEYS VKAFEDVDVS PYGVVNMFGY PIEYCMDYYS KDAYKNLPNE
NPINTSGTLV VGRVGAIANR ITDRVPVSPS EARSDFTFRV VVEADSIFSV INKPMDNKLM
GVTWFVVNDK VKSTYGVKAD GLYVAYVEEG SPAQIAGLKV GDVITSIDQK SIKNPDDVTK
IVANKKINDE ITVTVNRAGQ MVNIKLKLGV WKF
|
|---|
| |