| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_4935 |
|---|
| Symbol | |
|---|
| ID | 5094205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 5960533 |
|---|
| End bp | 5962329 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 644744358 |
|---|
| Product | GTP-binding protein TypA |
|---|
| Protein accession | YP_001197253 |
|---|
| Protein GI | 146302662 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCTA TTAGAAATAT TGCAATTATT GCCCACGTCG ATCACGGTAA AACCACTTTG
GTTGATAAAA TTATGTATCA CTGTCAATTA TTTCGTGAAA ACGAAAATAC AGGTGATTTA
ATTCTTGATA ATAACGATTT AGAGCGTGAG AGAGGTATTA CTATTACTTC TAAAAACGTT
TCTGTTCAGT ACAAAGGAAC AAAAATCAAC ATTATCGACA CTCCAGGCCA CGCGGATTTT
GGAGGTGAAG TTGAGCGTGT ATTGAACATG GCCGATGGTG TATGTTTGCT GGTAGATGCT
TTTGAAGGGC CGATGCCGCA AACGCGTTTC GTATTGCAAA AGGCTATTGA CTTAGGTTTA
AAACCATGCG TTGTAATTAA TAAAGTTGAT AAAGAAAACT GTACTCCGGA AGAAGTACAC
GAAAAAGTTT TTGACTTAAT GTTTGAATTA GGTGCTACAG AAGAGCAATT AGATTTCCCA
GCTGTTTACG GTTCTGCTAA AAACAACTGG ATGTCTGATG ACTGGAAAAA CCAAACAGAA
AACATCGAGC CTTTATTAGA CATGGTTATT GCTAATGTTC CTGCTCCTAA AGTTTCTGAA
GGTACTCCTC AAATGTTGAT TACATCTTTA GATTTCTCTT CTTTTACAGG TCGTATCGCT
ATCGGACGTC TTGAAAGAGG TACTTTGAAA GAAGGAATGC CAATTTCTTT AGTAAAAAGA
GATGGTAAAG TTATCAAATC AAGAATTAAA GAATTACACA CTTTCGAAGG TTTAGGCCGT
AGAAAAGTTG AAGAAGTTGT TGCTGGAGAT ATTTGTGCTG TTGTAGGTAT TGAAGGTTTC
GAAATTGGTG ATACTATCGC AGATTTTGAA AATCCGGAAG CTTTACAAAC AATTGCTATC
GACGAGCCAA CAATGAGTAT GTTGTTTACA ATTAACGATT CTCCTTTCTT TGGTAAAGAA
GGTAAATTTG TTACTTCTAG ACATATCCGT GAAAGATTAA CAAAAGAGCT TGAGAAAAAC
TTAGCGATGA AAGTTGGAGA AACTGATTCT GCTGATAAAT TCATGGTTTT TGGTCGTGGT
GTACTTCACT TATCTGTTCT TATCGAAACA ATGAGAAGAG AAGGGTACGA GCTTCAAATT
GGTCAGCCTC AGGTTATCAT CAAAGAAGTT GATGGTGTTA AATGTGAGCC AATTGAGGAA
TTAACTATCG ATTTACCAGA AAACCTTTCA GGTAGAGCGG TTGAATTCGT AACAATCCGT
AAAGGTGAAA TGCTTTCTAT GGAAGGTAAA GGTGAGCGTA TGATCATTAA ATTTAACATT
CCATCTCGTG GAATTATTGG TTTAAGAAAT CAATTGCTTA CTGCAACTGC TGGTGAGGCT
ATTATGGCAC ACCGTTTCAT TGGATACGAA CCATACAAAG GAGAAATTCC TGGACGTAAC
AACGGTTCAT TAATCTCTAT GGAAAACGGA AAAGCAATTC CTTACTCTAT CGATAAATTA
CAAGATCGTG GTAAATTCTT CGTTGATCCA AACGAGGATA TCTATGAAGG TCAGGTAATT
GGAGAAAATA CTCGTAGCGA CGATATGACT GTTAACGTTA CTAAAACGAA AAAACTATCT
AACGTACGTT CTTCTGGAGC AGATGATAAA GCTAGAATTA TTCCAGCTAT CAAATTCTCT
TTAGAAGAAG CTTTAGAGTA CATTCAAAAA GATGAGTATG TTGAAGTTAC TCCAAAATCT
CTTCGTTTAA GAAAGATTTA CTTAAGTGAA ACTGATAGAA AAAGATATAA AATCTAA
|
|---|
| Protein sequence | MESIRNIAII AHVDHGKTTL VDKIMYHCQL FRENENTGDL ILDNNDLERE RGITITSKNV
SVQYKGTKIN IIDTPGHADF GGEVERVLNM ADGVCLLVDA FEGPMPQTRF VLQKAIDLGL
KPCVVINKVD KENCTPEEVH EKVFDLMFEL GATEEQLDFP AVYGSAKNNW MSDDWKNQTE
NIEPLLDMVI ANVPAPKVSE GTPQMLITSL DFSSFTGRIA IGRLERGTLK EGMPISLVKR
DGKVIKSRIK ELHTFEGLGR RKVEEVVAGD ICAVVGIEGF EIGDTIADFE NPEALQTIAI
DEPTMSMLFT INDSPFFGKE GKFVTSRHIR ERLTKELEKN LAMKVGETDS ADKFMVFGRG
VLHLSVLIET MRREGYELQI GQPQVIIKEV DGVKCEPIEE LTIDLPENLS GRAVEFVTIR
KGEMLSMEGK GERMIIKFNI PSRGIIGLRN QLLTATAGEA IMAHRFIGYE PYKGEIPGRN
NGSLISMENG KAIPYSIDKL QDRGKFFVDP NEDIYEGQVI GENTRSDDMT VNVTKTKKLS
NVRSSGADDK ARIIPAIKFS LEEALEYIQK DEYVEVTPKS LRLRKIYLSE TDRKRYKI
|
|---|
| |