Gene Fjoh_3247 details

Gene Information

• Locus tag: Fjoh_3247
• ID: 5093408
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Flavobacterium johnsoniae UW101
• Kingdom: Bacteria
• Replicon accession: NC_009441
• Strand: -
• Start bp: 3875655
• End bp: 3882629
• Gene Length: 6975 bp
• Protein Length: 2324 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 644742674
• Product: leucine-rich repeat-containing protein
• Protein accession: YP_001195582
• Protein GI: 146300991
• COG category: [S] Function unknown
• COG ID: [COG4886] Leucine-rich repeat (LRR) protein

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAGAA AACTACTTAT TGGATTGCTA TTTCTGTTTA GCAGTCTATC TTTATTATCG 
GCCAAAAACA ATTTAAATAT TCCCATTCCG GATTCAGAAT ATCAGGCTTT GGTAGATTTT 
TATAAAGCTA CCGGAGAAGC CAGCTGGACG AACAAATGGA ATACGAGAGA AAATAATCTG 
CATGAAGTAG CCTGGTATGG CGTTACGGTA GAAAACGGAC ACGTTACTGC TATCGATCTT 
AACAATACCA GTAACATTTC TGGTTCTATT CCAGCTTCAT TTGGTAATCT GAAATATCTT 
AAATCGCTTT CTCTGTATGG AGGCGGTTAT GCAAAAGATT TCAGCACGAC AGATTTAAAT 
GTTTTTTCAG AATTAGAAGC ATTAGAAACG CTGGATTTAA GATACACCAA GTTAAAAGGC 
GTAATTCCAA CATCGTGGTC AAAATTAAAA AAGCTTCAAA CCCTTTATTT AAGTAATAAT 
AACATTACTG GATTATCAGC AGGGTTTGGG CAGATGGAAA GTCTTGTAAC TGTTGATCTT 
TCTCAAAACC AGATTACAAC TTTAATTAAA GAATTAGAGA ACTTAACGGC TCTTAGAAAC 
TTAAATGTAA CTTATAATAA AATTGCCACA GTTACAGCTT TACTGCCTAA TATAGTAAGT 
CTTAGTATAC AGTATCAGAC ACTTGGTCTT GAAAATATAA CCTACAGAGG AACCGACTTA 
AAAATAGGCA ATCTGCCTGG TGTAGTTTCG TACAGCAGAA CAAAAAATGA TTTTACCGCC 
AGACCAAAAT TTGCTCTTTA TGTGAGAGGA TATGAAATTG CCAATAATAT TGCAATGTCT 
GCCGACGGAA GTATCACAAT TTCGGCATCT TATCTTTCTT CTTTAAAAAA CGGTGATGAG 
GTTTACCTCT ATCAGCAATA CGATTATGAC ACAGGAGCTG TATCGAATTA CAGCCGAATT 
TATTTTACAA ATGTACAGGT TAACCAGCCG GCGGTTTCAT CAATAGAATA TCAGGCATTA 
GTTGATTTTT ACAATGCCAT GGGCGGCAGT AACTGGAATT ACAAATGGGA TATTAACGAA 
AACAATTTGA ATCAGGGTGC ATGGACAGGT TTAAGTATCG AAAACGGACA TGTTACAGGT 
TTAGATTTAG GAAATACAAG CAGTGTTTCG GGGTCAATTC CGGCTTCATT TGGAAATTTA 
AAGTATTTAA AGAATCTTTC GCTTTATGGT GGAAATTATT CAAAAAACCT AAGCACAACA 
GATTTAGGCG TTTTATCTGA ATTGCAATCG CTTGAAACAT TAAATTTAGA ATATTGCAGA 
ATTTCGAGTG CAATTCCGTC TTCATGGAGT AAATTAAAAA AACTAAAAAC CATCATTATA 
TCTGGTAACA CTATTGCAGG ACTGCCTGAA GAATTGGGCG AAATAGAAAG CTTAGTTACA 
TTAGAGGCAA ACAACAACCA GATAAAATCG ATTCCTGCTT CAGTAGGAAA TCTCGCGAAT 
CTGGTTACCT TGAATTTATC CTACAACCAG ATTACGACAT TAGTAAAAGA ACTGGAAAAT 
GTAAATACAT TAAGAACATT AAACATTAAC AGCAACAGTA TATCGGTTGT TTCTGCGTTG 
TTAAGCAGTA CGGTTAATTT AAATCTTACT TCTCAAAACA TAAATGTTGA AGGCATTATT 
TACACAGGTT CTGATTTAAA AATAGAAACA CTGCCAAATA CAACGTATTA CAACAGAACC 
AAAAATGATT TTTCTTCCAG AAGAAACTAC TATGTATACG TGGGAGGAAA TCAGGTAGGA 
AATCTTATCA CGGCAGCGGC AGACGGCAGT GTTATAATTC CGGCATCTTA TTTATCTTCA 
ATAAGAACAG GAGATCAGTT TTATTTGTAT CAAAATTACG ATTATAACGA AGGAGGTACT 
GCCCATTATT CAAGAATCAA TTTTGTAAAT GTAAAAGTAG AGCAGCCACA AATCCCGGAT 
GCAGAATATC AGGCTTTGGT TGATATTTAC AATGCCATGG GAGGTGCAAA CTGGAACAAC 
AAATGGGATG TTTCATCAAA TAATCTGCAT GAAGGAGCTT GGTATGGCGT GAGCATTGAA 
AACGGACATA TTACAGGATT AAGTTTTAAT AATACCTGGA ACGTTTCAGG AACAGTTCCG 
GCTTCTATAG GAAATCTTAA ATATTTAAAA AATCTTTCAT TTTATGCAGG AAGCTACAGC 
AAAAATTTAA GCACAACCGA TTTAAACGTT TTTTCTGAAT TAGAATCTTT AGAAACTTTA 
GATCTTCAAT ACAGCAAAGT AAAAGGCGAT ATTCCGGCTT CATGGAATAA ACTGAAAAAA 
CTAAAAACAG CCTATTTAGG TTATAATACT TTAACTGCTT TACCAGAAAA TATTGATGCT 
ATGGAAAGTC TTGTAACTCT TGGAGTACAA GGCAACCAGT TAAAAAGCAT TCCGGTTTCT 
ATAGGTAATC TGACTAAACT TGTAACTTTA GAATTATCAG ATAACCAGAT AGAAGTTCTT 
ATAAAAGAAT TGGAAAACAT TAGCACGCTT AGAACTTTAA ATCTTCAAAG TAATAATATA 
AAAGATGTCA AAGCATTGCT AAACAGTAAT GTAAGTCTAA ATCTTCATTA TCAAAATATA 
AATGTAGAAG GACTAATTTA TACCGGCGTA GATTTAAAAG TCGAAACACT GCCTAATCCT 
GTTTATTACA ACAGAACAAA CAACGATTTT ACAGCCAGAA GAACCTTTTC GGTATATGTA 
GGAGGAAATC AGGTGGGCAG TACAATTACT GCAGACGAAG ACGGAAGCAT TGTAATTCCG 
GCATCTTATT TATCGTCTAT TAAAACCGGC GATTTGTTTT ATTTGTATCA GCCTTATGAT 
TATTATAACG GAAGTGTTAC TAATTATTCA AGAATCAACT TTGTAAATGT AAAAGTAGAC 
CAGCCAAAAA TTCCGGATGA AGAATATCAG GCATTAGTTG ATTTTTATAC TGTTATGAAT 
GGTACAAACT GGACAAATAA ATGGAATGTT GCCGAAAACA ATCTTCATGA AGGTGCATGG 
TATGGCGTAA GTATTGAAAA CGGACATATC TCAGGACTTA ACCTTAACAA TAACAGTTCA 
GTAAGAGGAG CGATTCCGGC TTCGATTAAA GATTTAAAAT ATCTTAAAAC TTTATCTCTT 
TACGGCGGAA GTTACAGCAA AGATTTTAAT ACCACAGACT TGGCAGTTTT ATCTGAACTT 
GAAAACCTGG AATATTTAGA TTTAAGATAT ACCAAAATTA AAGGTGATAT TCCTGCTTCA 
TGGAACAAAT TAAAAAAGGT AAATACACTT TATCTGGGCT ACAACGCACT TACGGCTTTG 
CCGGAAGATT TTGGAGGAAT GGAAAGTCTG GTAACAGTCG ATTTGGCTTC AAACGAAATA 
AAAGTAATTC CGGCTTCGAC AGGAAATCTG GCTTCTTTAA AAACTTTAGA TTTATCGTAT 
AATAAAATTG AAGTGCTTAT TAAAGATTTG GAAAAAAACA CAGCTTTAAC GAGTCTGAAT 
TTATCGAATA ATAAAGTTGG CGTAATTCAG GGAATGTTGA CAAACCGCGT AAGCTTGAAT 
TTAAATTATC AGACTTTAAG CGTTGAGAAC TTTTTATATG AAGGAACCGA TGTTAAAGTG 
AGCAATCTTC CAAGCACTAT TCTTTACAAT AAATCAAGCA ACGATTTTTC TGCTCAAAGA 
CCCTTTAGAT TGTATGTAAA AGGTGAGCAG ATAGGAAGTA ATATTACAGT TGCCAGCGAT 
GGAACAATTA CAATTCCGGC AGATTATCTG GCAACTTTAA AAACCGGAGA TGAATTGTAT 
TTATATCAGC CTTATGAAGG ATCTGAAGCT TCTCCAAACT ACTCTAGTGT CTATTTTACC 
AACGTAAAAG TAGATCAGCC AAAAATTCCA GATGCAGAAT ATCAGGCTTT GGTAGATTTC 
TATAATGCCA TGAATGGGGC AAACTGGAAC AATAAATGGG TAACGGCAGA AAACAATCTG 
CATGAAGGAG CGTGGTATGG CGTAAGTATT CAAAACGGAC ATATTACAGG ATTAAACCTA 
AACAATAATT CGAATGTTTC CGGAGCAATT CCGGCATCGT TTGCCAATTT AAAATATTTA 
AAAAACCTTT CTTTATTTGG AGGAAATTAT ACAAAAAATC TAAGCACAAC TGATTTAGGA 
ATTATTTCAG GCCTTGAATC TTTAGAGATT TTAGATCTTA GATATACAAG GTTAAAAGGT 
GTTATTCCAT CGTCATGGAG CAAACTGCAG TCATTAAAAA CGTTGTATTT AAGTAATAAT 
AACATTGAAG ATGCAGATGA AGCCCTGGCA CATTTACCTC TTTTAAAAAC AGTAGATTTT 
AGTTATCAAA CCATTACAAT TCCAACTATC GAGGTAGGAG CAAACGAACT GGTTATAAAC 
CTGCCGGTTT TATCAACTTT TTTGTTTAAT ACTAATGGCG GTGTTATTAA TAATAAAAAC 
TATTTTACAC TTTACATTAA TGGTGTTAAT AAAGCCTCAA ATTATTCTAA CAGCGAAGGA 
AAATTAATCT TCAAAGACAT AGCTTTATTT GGAATTAAAC TAACTGACAA AATCAGCATT 
CAGCAGAATG ATGGTACAGC ACAGCAAACT ACTATTAATT ATACTCAGGT AGTTTTTGGA 
AAACCATTAA CAGATGAAGA ATTTGAGATT TTGAAAAAAA TCTACGCGAG TACAAACGGA 
ACACAGTGGA CTCAGAAATG GGATATTTCG CAAAATAAAC TTCATGAAAT AAGCTGGTAC 
GGAGTTGGAA CAAAAGACGG ACACGTTGTT TCGTTGAGTT TATCTGCCAA TAATCTATCA 
GGATCGCTTC CTGCTGAGTT GTCTGATTTA ACGCATTTAG AGACTTTAAA CCTGCAGTCG 
AATGCCATTG AAGGGGCTCT GCCGTCTGAT TTAGGAAGGC TGACCAGTTT AAAAACACTT 
AATTTACAAT CGAACAAATT TACAGGAACA CTGCCGGTTT TATCGGGAAT TTCAGGATTG 
AAAAAACTTT CAATTGCAGG AAATACTTTC AAAGGAACAA TTCCGGGGCA TTTCAATGAT 
TTCGAAAATA TCGAACAAAT TGATCTTTCA AACAATGGTT TTGATGCTTT AGAAAGACCA 
TTTACTTACG ATCTGGCTAA AGTTTACATT AATTTAAGAG GACAGGTTAT TGCCAAAGAT 
GAATATCTTT ATTTAAAAGG CGACGAAATA GTTGTAGATC TTCCAGCAAT TACAACTTAT 
AATGAAACCA CTCAGGATTA TTCAGGACAA TACCAGTTTG AACTGCAGGC TAATAATTTC 
AAAATTTCTG AAGCCACAGT TTCAGGTAAT ACCATAACAT TCCCAAATAT TTCTGTGGCG 
GGTATACCTG CGGGTGCAAA AATTGCAATT TGGCAGAAAA ACGGAACTTC GCAGGGAACT 
TATGTTCAAT TTAAAGGAAT TGCCGATGGT TCTGAAACGC CTTTAATTGC CGAAGAATAT 
GATGCTTTAG TGGCATTTTT CCAAAGCGCA GGCGGAACAG GATGGAAAGA AGTCTGGGAT 
ACATCATCAA ACAATCTTCA TGAAAAGAAA TGGAAAGGTG TAACGACAAA CGACGGACAC 
GTAATATCTA TTAATCTTCC TGATAACAAC TTAACCGGAA ATATCAGCCC GGAAATTGGA 
AAATTCAGCG AACTGCAAAA CCTAAATCTG GCTAAAAATA AACTAACAGG AACAATCCCT 
GAAAGTGTAT CAAAAATAAC CAAGCTAAAA ACAGTTGACC TTTCAGAAAA CGAACTGACG 
GGAATTGATG CTGCGTTTTT ACCAGCAGTG AATTTTAAAA TTGACCGTCA GAAAATTAAT 
TTGGGAGAAC TGCCTTTAAC ATTAAATGCT GTTTTAAAAG ATCAAAAAAT CAACCGTTAC 
GATCATACCA ATTCGATTTT TAATGCCACT CAGTCGTATA ACATGACTTT GAAGGATTAT 
TTCCAAATGG TTACAGTTCC TGAAGACGGC ATTAAACTGA CCAATATTTT AAGCGAATGG 
AATGTGCCAA ACAACCAGAC TTTAGAATTA AGACAAATCG CCGGATCTGC CAGAAACAGT 
GTACTAACGT ATACCATAAC GTACAGAGAA GGAGATTCTA ATTTAGACGG AATTGTAAAT 
ATTCTGGATA TTCAATCGAC TTTGAATTAT ACATTAAGCC AAAAACCAAA ATTCTTTAAT 
TATGGTGCGG CAGATATCAA TAAGGATAAA AACCTAAACG TACTGGATAT TATTTCATTG 
ATTAATAAAA TCCAGTCCGG AACACTTGAA AATCCTGCAA GCGCAAAACG TATGGCTTTT 
ACGGACAATG AAGATGTTGT TTTAAGTATT GAAGATAATA CGCTTTTTAT CGACAATCAG 
TCGGTTTCGA CAGCAGCATT TGATATTCGT TTAAAAGGCG GCAGCAAAGC ACAGACAGAA 
GAGCTTCTTT CTGGTTTGGG TTATACGGTT TCAGTCGCAG AACGTCAGGG CGAAATTAGC 
ATTGTAGGTT TCTCTATGGA TAAATCACTT TCACGAAAAC AAGCTATTGC AAAAGTATCA 
GCTCAAACAG AAATTTTATC TGCCGTGATT TCAAATACAG AGGCAAACGC ATTGACCTAT 
AAAATTTCTA AAAATTTGGG TGTTGACGAT AGTAATAAAG ACAATGCAAT TGCGCTTTCA 
AATTATCCAA ATCCATTTAC GGATCAAACT GTAATTCAAT ATCATTTACC TGAAAATGAA 
GACAAAGCGA CACTAAAAGT TTTTGATACA ACCGGAAGAA CTGTTTACAT ACAGTCTGAT 
CTTGATGCAT CACAAGGAAA TCATGAATTT ACTTTTCAGC GAAGAGATCT TGCATCGGGA 
ATCTATTTCT ATACCATCGA AATACAAAAT GGAGCAAAAC CTGCCATTTT TAAAGGAAAA 
ATGTTAATAC AATAA 

 

Protein sequence

MKRKLLIGLL FLFSSLSLLS AKNNLNIPIP DSEYQALVDF YKATGEASWT NKWNTRENNL 
HEVAWYGVTV ENGHVTAIDL NNTSNISGSI PASFGNLKYL KSLSLYGGGY AKDFSTTDLN 
VFSELEALET LDLRYTKLKG VIPTSWSKLK KLQTLYLSNN NITGLSAGFG QMESLVTVDL 
SQNQITTLIK ELENLTALRN LNVTYNKIAT VTALLPNIVS LSIQYQTLGL ENITYRGTDL 
KIGNLPGVVS YSRTKNDFTA RPKFALYVRG YEIANNIAMS ADGSITISAS YLSSLKNGDE 
VYLYQQYDYD TGAVSNYSRI YFTNVQVNQP AVSSIEYQAL VDFYNAMGGS NWNYKWDINE 
NNLNQGAWTG LSIENGHVTG LDLGNTSSVS GSIPASFGNL KYLKNLSLYG GNYSKNLSTT 
DLGVLSELQS LETLNLEYCR ISSAIPSSWS KLKKLKTIII SGNTIAGLPE ELGEIESLVT 
LEANNNQIKS IPASVGNLAN LVTLNLSYNQ ITTLVKELEN VNTLRTLNIN SNSISVVSAL 
LSSTVNLNLT SQNINVEGII YTGSDLKIET LPNTTYYNRT KNDFSSRRNY YVYVGGNQVG 
NLITAAADGS VIIPASYLSS IRTGDQFYLY QNYDYNEGGT AHYSRINFVN VKVEQPQIPD 
AEYQALVDIY NAMGGANWNN KWDVSSNNLH EGAWYGVSIE NGHITGLSFN NTWNVSGTVP 
ASIGNLKYLK NLSFYAGSYS KNLSTTDLNV FSELESLETL DLQYSKVKGD IPASWNKLKK 
LKTAYLGYNT LTALPENIDA MESLVTLGVQ GNQLKSIPVS IGNLTKLVTL ELSDNQIEVL 
IKELENISTL RTLNLQSNNI KDVKALLNSN VSLNLHYQNI NVEGLIYTGV DLKVETLPNP 
VYYNRTNNDF TARRTFSVYV GGNQVGSTIT ADEDGSIVIP ASYLSSIKTG DLFYLYQPYD 
YYNGSVTNYS RINFVNVKVD QPKIPDEEYQ ALVDFYTVMN GTNWTNKWNV AENNLHEGAW 
YGVSIENGHI SGLNLNNNSS VRGAIPASIK DLKYLKTLSL YGGSYSKDFN TTDLAVLSEL 
ENLEYLDLRY TKIKGDIPAS WNKLKKVNTL YLGYNALTAL PEDFGGMESL VTVDLASNEI 
KVIPASTGNL ASLKTLDLSY NKIEVLIKDL EKNTALTSLN LSNNKVGVIQ GMLTNRVSLN 
LNYQTLSVEN FLYEGTDVKV SNLPSTILYN KSSNDFSAQR PFRLYVKGEQ IGSNITVASD 
GTITIPADYL ATLKTGDELY LYQPYEGSEA SPNYSSVYFT NVKVDQPKIP DAEYQALVDF 
YNAMNGANWN NKWVTAENNL HEGAWYGVSI QNGHITGLNL NNNSNVSGAI PASFANLKYL 
KNLSLFGGNY TKNLSTTDLG IISGLESLEI LDLRYTRLKG VIPSSWSKLQ SLKTLYLSNN 
NIEDADEALA HLPLLKTVDF SYQTITIPTI EVGANELVIN LPVLSTFLFN TNGGVINNKN 
YFTLYINGVN KASNYSNSEG KLIFKDIALF GIKLTDKISI QQNDGTAQQT TINYTQVVFG 
KPLTDEEFEI LKKIYASTNG TQWTQKWDIS QNKLHEISWY GVGTKDGHVV SLSLSANNLS 
GSLPAELSDL THLETLNLQS NAIEGALPSD LGRLTSLKTL NLQSNKFTGT LPVLSGISGL 
KKLSIAGNTF KGTIPGHFND FENIEQIDLS NNGFDALERP FTYDLAKVYI NLRGQVIAKD 
EYLYLKGDEI VVDLPAITTY NETTQDYSGQ YQFELQANNF KISEATVSGN TITFPNISVA 
GIPAGAKIAI WQKNGTSQGT YVQFKGIADG SETPLIAEEY DALVAFFQSA GGTGWKEVWD 
TSSNNLHEKK WKGVTTNDGH VISINLPDNN LTGNISPEIG KFSELQNLNL AKNKLTGTIP 
ESVSKITKLK TVDLSENELT GIDAAFLPAV NFKIDRQKIN LGELPLTLNA VLKDQKINRY 
DHTNSIFNAT QSYNMTLKDY FQMVTVPEDG IKLTNILSEW NVPNNQTLEL RQIAGSARNS 
VLTYTITYRE GDSNLDGIVN ILDIQSTLNY TLSQKPKFFN YGAADINKDK NLNVLDIISL 
INKIQSGTLE NPASAKRMAF TDNEDVVLSI EDNTLFIDNQ SVSTAAFDIR LKGGSKAQTE 
ELLSGLGYTV SVAERQGEIS IVGFSMDKSL SRKQAIAKVS AQTEILSAVI SNTEANALTY 
KISKNLGVDD SNKDNAIALS NYPNPFTDQT VIQYHLPENE DKATLKVFDT TGRTVYIQSD 
LDASQGNHEF TFQRRDLASG IYFYTIEIQN GAKPAIFKGK MLIQ