| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_2256 |
|---|
| Symbol | |
|---|
| ID | 5094392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 2718989 |
|---|
| End bp | 2721964 |
|---|
| Gene Length | 2976 bp |
|---|
| Protein Length | 991 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 644741685 |
|---|
| Product | bifunctional preprotein translocase subunit SecD/SecF |
|---|
| Protein accession | YP_001194603 |
|---|
| Protein GI | 146300012 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAATA AAGGACTTAT TAAATTTTTC GCAATTCTAT TTGCATTGGT AAGTATTTAC
CAACTATCAT TCACTTTTGT GGCAAATAAT GTCAAAGGTG AAGCTAAAGC TTTTGCAGGA
GATAATCCTG ATAAAGAGCT GAAATATTTA GATTCTATCG GTAAAGAAAA AGTATTCAGT
CTTGGTTTTA CAGACTTCAC TTATAATGAA GTAAAAAACA AACAGCTAAA TAAAGGTCTT
GACTTAGAAG GAGGAATCAA CGTTATTCTT CAAATCTCTG TTAAAGATGT ATTAAAAGGT
TTAGCGAATA ATTCTAAAAA TCCGGTATTT AATAAATCAT TAGCTGATGC AACTGCGAAT
TTAGAAGGAA ATAAGACCTA TTTAAATAAA TTCTTCGAAG CTTTTGAAGC TAACTCAAAA
GGAACTGTAA AATTGGCTTC GCCAGATATT TTTGCAAACA GAAGTTTACA AGGAGACGGT
GGTATCGATT TTCAAATGAC TGATGCACAA GCTCAAAAAG TTATCAAAAG AAAAGTTGAT
GAGTCTATCG AAAGTGCTTA CAAAGTATTA AGAGAGCGTA TCGACAAATT TGGTGTAACA
CAGCCAAACA TCCAAAAATT AGGAGAAACA GGAAGAATCT TAGTAGAGCT TCCAGGTGCT
AAGGATGTTG ATAGAATTAA AAAATTATTA GGAGGAAAAG CTCAATTAGA GTTCTGGGAA
ACTTTTAAAA TTGAAGAAGT TGGTAACTTT TTAGTTGCTG CTAACGAAGC TTTAAAAAAG
ACAGAAGTTA AGAAAACAGA AACTAAAGCT GTAGCTAAAG ATTCATTGAA TGCTTTATTA
ACAGATAACT CTAAAGATTC TCTTGACGCT AAAAAAGGAA ATAATCCTTT ATTTGACAAA
ATGATTGTTC AGGGTGGTGG TCCGGTTTTA GGATACTTCG CTACTAAAGA TACTGCTGCA
ATCAACGGTT ATTTCAAAAG ACCAGATATT AGAATTTTAT TGGGTGCTGA CCAACACAAT
GCAAAATTTG TTTGGAGCAA ACCAACTACT ATAAAAGATG CTAAAGCAAA AGAAGTTGAA
GCTGTAGAAT TATACGCTTT AAAAGGAAAC AGAGATAACG TACCAGCTAT GAGCGGTGGT
GTTGTAACTG ATGCAAAAGA TACTTTTGAC CAAATGGGTA AACCAGCTGT TTCTATGCAA
ATGAACAGCC AGGGAGCTAA AGTTTGGGAA GAGTTAACAG GAAGAGCTTT CTCTCAAAAA
GGTTATATCG CTATTGTTTT AGATAACATC GTTTATTCTG CGCCAGGTGT TACAAGCGGT
CCAATCGCTG GAGGAAGATC TGAAATTACA GGTTCTTTTG ATGTTGCTGA AACAAAAGAT
TTAGCTAACG TATTAAATGC AGGTAAATTA CCAGCATCTG CAGACATTAT TCAATCTACA
GTTGTAGGGC CATCTTTAGG TCAGGCAGCA ATTGATGCAG GAACAATTTC ATCTGTATTA
GGTTTCTTAT TAGTTTGTGT TTGGATGGTA TTCTATTATG GTAAAGCTGG ATGGTATGCA
AACCTTGCTT TATTATTAAA CTTACTATTC TTATTCGGAA TTATGGCAAG TTTTGGTTTC
GTACTTACAT TGCCGGGTAT TGCAGGTATC GTATTAACAT TAGGTACTGC GGTAGATGCG
AACATCATTA TATATGAAAG AGCAAAAGAG GAATTACGTG AAGGTAAATC ATTATCAGAA
GCTGTAGCAG CATCTTACGG ATGGCACGGA GCAATGCGTT CTATTATTGA TGCTAACGTA
ACTCACGTTT TAACTGGAGC GATCTTATTT ATTTTTGGAA CAGGACCAAT CAAAGGTTTC
GCGTTAACAT TATTAATTGG TATCGTAACT TCATTGTTTA CTTCTATCTT TATTGCTAGA
ATTTTCATTG ACAGAAATAT TGCAGGAAAA GCTGATTTAA CTTTCTCTAC AAGTATTACT
AAAAACTGGT TTACAAACTT CCACTTTGAC TTTATTAAAG TTAAAAAATT CACTTACATT
TTCTCTTCTA TAGTAACAGT AGTAAGTTTA ACTTCTATCT TCTTTATTAA CGGATTAGAT
GAAGGTGTAG ATTTTGTTGG AGGTAGAACT TTCCAGGTTA AATTTGAAAA ACCAATCGAT
GCAACTGTAG TTTCAGATGA ATTATCTGCT GCTTTTGGTA CTCCGGTTGA AGCTAAAATT
TTAGGTGATG ACGATCAGTT GAAAATCACA ACTAAATATA AAATTAAAGA AGACGGTGTA
GCTATAGACG AAGAAGTGAA CCAAAAATTA TACAAAGCAT TACAAAAGTA TTACCCAAAT
ACTTCTTATG ATAAATTCAT CAACTCTTTT GACGGTAAAA AAGTTGGAGT TTTACAAGCT
TCTAAAGTTG GAGCTTCTAT CTCAGAAGAT ATTAAAACAA ACTCTTACTG GGCAGTACTT
GGAGCAATGG CAGTTATTTT CTTATACTTA ATGGTATCTT TCCGTAAATG GCAGTATTCA
TTAGGTGCGA TTGCAGCTGT TGCACACGAC GTAATCTTCG TATTAGGAAT CTACTCTTTA
TGCTACAAGT TCATGCCATT CCACATGGAA ATGGACCAGC ACTTCATCGC TGCGATCCTG
ACGGTAATTG GTTACTCTAT GAACGATACT GTAATTGTAT TTGACAGGGT GAGAGAGTTT
ATCATCGGAA ACCGTAAAGG TAGTTTCGAA GATATCGTAA ATGCTTCTAT TAACACTACA
TTATCTAGAA CATTGAATAC TTCATTAATG ATGATCATTG TATTATTAAC GATGTTTATC
TTTGGTGGTG AGTCAATCAG AGGATTTATC TTTGCAATGT TAATTGGTAT TATTGTAGGT
ACTTATTCTT CATTATTTAT CGCTACTCCG GTATTGGTAG ATACGATTTC AAGTGATGAA
AAACACACAA TCGAAGACAA ACATAATAAA GCATAA
|
|---|
| Protein sequence | MQNKGLIKFF AILFALVSIY QLSFTFVANN VKGEAKAFAG DNPDKELKYL DSIGKEKVFS
LGFTDFTYNE VKNKQLNKGL DLEGGINVIL QISVKDVLKG LANNSKNPVF NKSLADATAN
LEGNKTYLNK FFEAFEANSK GTVKLASPDI FANRSLQGDG GIDFQMTDAQ AQKVIKRKVD
ESIESAYKVL RERIDKFGVT QPNIQKLGET GRILVELPGA KDVDRIKKLL GGKAQLEFWE
TFKIEEVGNF LVAANEALKK TEVKKTETKA VAKDSLNALL TDNSKDSLDA KKGNNPLFDK
MIVQGGGPVL GYFATKDTAA INGYFKRPDI RILLGADQHN AKFVWSKPTT IKDAKAKEVE
AVELYALKGN RDNVPAMSGG VVTDAKDTFD QMGKPAVSMQ MNSQGAKVWE ELTGRAFSQK
GYIAIVLDNI VYSAPGVTSG PIAGGRSEIT GSFDVAETKD LANVLNAGKL PASADIIQST
VVGPSLGQAA IDAGTISSVL GFLLVCVWMV FYYGKAGWYA NLALLLNLLF LFGIMASFGF
VLTLPGIAGI VLTLGTAVDA NIIIYERAKE ELREGKSLSE AVAASYGWHG AMRSIIDANV
THVLTGAILF IFGTGPIKGF ALTLLIGIVT SLFTSIFIAR IFIDRNIAGK ADLTFSTSIT
KNWFTNFHFD FIKVKKFTYI FSSIVTVVSL TSIFFINGLD EGVDFVGGRT FQVKFEKPID
ATVVSDELSA AFGTPVEAKI LGDDDQLKIT TKYKIKEDGV AIDEEVNQKL YKALQKYYPN
TSYDKFINSF DGKKVGVLQA SKVGASISED IKTNSYWAVL GAMAVIFLYL MVSFRKWQYS
LGAIAAVAHD VIFVLGIYSL CYKFMPFHME MDQHFIAAIL TVIGYSMNDT VIVFDRVREF
IIGNRKGSFE DIVNASINTT LSRTLNTSLM MIIVLLTMFI FGGESIRGFI FAMLIGIIVG
TYSSLFIATP VLVDTISSDE KHTIEDKHNK A
|
|---|
| |