Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fjoh_1202 |
Symbol | |
ID | 5089747 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Flavobacterium johnsoniae UW101 |
Kingdom | Bacteria |
Replicon accession | NC_009441 |
Strand | + |
Start bp | 1366605 |
End bp | 1369970 |
Gene Length | 3366 bp |
Protein Length | 1121 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 644740604 |
Product | transcription-repair coupling factor |
Protein accession | YP_001193553 |
Protein GI | 146298962 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.851406 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAGTAAAA ACGTATTATA TACAACATAC GATAATCTGC CAAAAGCACA GCAGATTGCA TCAGGTTTAT TAGAAGGGAA TCAGATAAAA ATGAATATCA GCGGATTACT TGGATCTGCT GTTTCATTTA TAATTCGTTC CGTTTTTAAG AAAACCGAAC TGCCTTTTTT GATTGTTTTA GACAACAAAG AAGAAGCCGC ATATTACCTA AACGATCTGG AGCAGATGAT TGGCGAACAG GACGTTTTGT TTTATCCCGT ATCATTTCGC CGTCCGTATC AGGTTGACGA AACAGACAAT GCCAATGTTC TGCTTCGCGC TGAGGTTTTA AACCGAATCA ATTCAAGAAA AAAACCAGCT GTAATTGTTA CTTATCCTGA AGCACTTTTT GAGAAAGTAG TAACGCGCCA GCAATTAGAT AAAAACACTT TAAAAGTCTC TTTAAACGAT AAAATTTCGA TTGATTTTAT TAACGAAGTT TTATTTGAAT ACGAATTTAA AAGAGTCGAT TTTATTACAG AACCCGGCGA ATTTTCAGTT CGCGGGGGAA TTGTCGATGT ATTCTCATTT TCAAACGACC ATCCTTACAG AATTGAGTTT TTTGGAAATG AAGTAGACAG CATTAGAACT TTTGATGTAG AAACACAATT ATCTGTAGAA ACACATAAAA AGATTACGAT TATCCCAAAT GTTGAAAACA AGATATTTCA GGAAAACCGT GAAAGTTTCT TAGATTATAT TGCCGAAAAA ACAGTTCTTT TTATTCAAAA TACCGAAGGA CTTTTCAGTC AGTTAGACAA ACAATTTGCA AGGGCAGAAG AAGCTTTTGA GAAATTGTCT AAAGAAATAA AACACGCTGC ACCAGAACAG TTGTTTTTAA ATCAGGCTTC GTTTATAAAA CGAGCATTGG ATTTCTCGGT TGTAGAATTG GCTTCAAGAC CAGTTTTTAA AACCACTAAA AAATTCGAAT TCCATATTCA GCCTCAGCCG TCATTCAACA AACAATTTGA TTTATTGCTG AATAATTTAA GCGATAATCA TTTTAACGGA TATGTCAATT ATCTGTTTTG TTCGAATGAA ACGCAGGCAA AGCGTTTTCA CGATATTTTT GAAAGCTTAG ACGAAGCCAA TTCAGAAAAT ATTAGAAAGC ATTATCATAC CATTGTATTG CCTTTATATC AAGGTTTTAT TGATGAAGAA AATCAAATAA CCGCTTATAC CGATCACCAG ATTTTTGAGC GTTATCATAA ATTCAACATT AAAAACGGAT ATTCTAAAAA ACAGAATATC ACGCTTAAAG AATTAACTGC ACTTTCTGTC GGCGATTATG TAACACACAT AGACCATGGA ATTGGAAAGT TTGGCGGATT GCAGAAAATT CAGGTTGAAG GCAAAACCCA GGAAGCCATA AAACTGGTTT ATGCCGATAA TGATATTGTG TATGTGAGCA TTCACTCGCT TCATAAAATT TCGAAATACA ACGGAAAAGA CGGAACGCCT CCGAAAATCT ATAAACTTGG ATCGAACGCC TGGAAGGTTT TAAAACAGAA AACCAAAGCG CGCGTCAAAC ATATTGCATT CAATTTGATT CAGCTGTATG CAAAACGTCG TTTAGAAAAA GGGTTTCAGT TTGCGCCGGA CAGTTATCTT CAAAACGAAT TAGAAAGTTC GTTTATTTAC GAAGATACGC CGGATCAAAT GAAATCGACA CAGGAAGTAA AAGCCGATAT GGAAAGCGAT CGTCCAATGG ATCGTTTGGT TTGCGGTGAC GTTGGTTTCG GAAAAACAGA GGTTGCCATT CGTGCAGCTT TTAAAGCCGT TGACAACAGT AAACAAGTGG CAGTTTTGGT ACCGACAACT ATTTTGGCGT ATCAGCATTA CAGAACTTTT TCTGAACGTT TAAAAGACAT GCCAGTTTCA ATTGGCTATT TAAACCGATT TAGAACGGCA AAACAAAAAA CACAAACGCT AAAAGATTTA GCCGAAGGAA AACTGGATAT TGTAATTGGA ACACATCAAC TGGTCAATAA AAATGTAGTT TTTAAAGACT TAGGTTTATT GATTGTCGAT GAGGAACAAA AGTTTGGAGT TAACGTAAAA GATAAACTGA AAACCATTGC TGCAAATGTG GATACGCTGA CATTAACTGC AACGCCAATT CCGAGAACTT TGCAGTTTTC ATTAATGGCT GCGCGGGATT TATCGGTAAT TACAACGCCT CCACCAAACC GTTATCCAAT TGAAACCAAT GTGGTTGGTT TTAATGAAGA AATTATTCGT GACGCGATTT CATATGAAAT TCAGAGAAAC GGGCAAGTCT TCTTTATCAA TAATAGAATT GAAAACATAA AAGAAGTGGC TGGAATGATT CAGCGTTTGG TTCCAAATGC AAGAGTTGGA ATTGGCCACG GACAAATGGA CGGTGCCAAA CTTGAGGAAT TGATGTTAGG TTTTATGAAC GGAGATTTTG ATGTTTTGGT AGCAACCACA ATTATCGAAA GTGGTTTGGA CGTTCCAAAT GCAAATACGA TTTTCATCAA CAACGCTAAT AATTTCGGAT TATCAGATTT GCATCAAATG CGAGGCCGAG TAGGGCGAAG CAATAAAAAA GCATTTTGTT ATTTCATCTG TCCTCCGTAT TCATCAATGA CCGAAGATGC CAGAAAACGC ATTCAGGCGT TGGAACAATT CAGTGAATTA GGAAGCGGTT TCAACATTGC GATGAAAGAT CTTGAAATTC GAGGCGCGGG AGATTTATTG GGCGGAGAAC AAAGCGGTTT CATTAATGAA ATTGGTTTTG ATACGTACCA GAAAATTATG AATGAAGCCA TTGAAGAGTT GAAGGAAAAC GAATTCAAAG ATTTATATCC TGAAGAAAAT GATATTGATA CCAAAGAATA TGTAAAAGAC ATTCAAATCG ATGCCGATTT TGAGCTTTTA TTCCCGGATG AATATATCAA TAACGTTTCA GAACGTTTGG TTTTATACAA CGAATTAGGC GCTATAAAAG ACGAAGCAGG ATTACAGGAA TTTGAAAGAA AACTAATTGA CCGTTTCGGG CCTTTGCCAA AACAAGCGAC AGCATTGTTA AACAGCATTA GAATAAAATG GATTGCAACA AAAGTCGGAA TCGAGAAATT AGTCTTGAAA CAAGGCAAAA TGATTGGCTA TTTCGTATCC GATCAGCAGT CAGATTATTA TCAGTCTGTG AAGTTTAGAA ACGTCCTGAA CTTTGTTCAA AAACATAGTT CGCTCTGCAA AATGAAAGAA AAACAAACTG TAAACGGATT ACGTTTATTG TTGACTTTTG AAAATGTGAA GTCGATAAAA CGAGCTTTAG AGTTAATGGA ATTGTTTGAG GAGTAG
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Protein sequence | MSKNVLYTTY DNLPKAQQIA SGLLEGNQIK MNISGLLGSA VSFIIRSVFK KTELPFLIVL DNKEEAAYYL NDLEQMIGEQ DVLFYPVSFR RPYQVDETDN ANVLLRAEVL NRINSRKKPA VIVTYPEALF EKVVTRQQLD KNTLKVSLND KISIDFINEV LFEYEFKRVD FITEPGEFSV RGGIVDVFSF SNDHPYRIEF FGNEVDSIRT FDVETQLSVE THKKITIIPN VENKIFQENR ESFLDYIAEK TVLFIQNTEG LFSQLDKQFA RAEEAFEKLS KEIKHAAPEQ LFLNQASFIK RALDFSVVEL ASRPVFKTTK KFEFHIQPQP SFNKQFDLLL NNLSDNHFNG YVNYLFCSNE TQAKRFHDIF ESLDEANSEN IRKHYHTIVL PLYQGFIDEE NQITAYTDHQ IFERYHKFNI KNGYSKKQNI TLKELTALSV GDYVTHIDHG IGKFGGLQKI QVEGKTQEAI KLVYADNDIV YVSIHSLHKI SKYNGKDGTP PKIYKLGSNA WKVLKQKTKA RVKHIAFNLI QLYAKRRLEK GFQFAPDSYL QNELESSFIY EDTPDQMKST QEVKADMESD RPMDRLVCGD VGFGKTEVAI RAAFKAVDNS KQVAVLVPTT ILAYQHYRTF SERLKDMPVS IGYLNRFRTA KQKTQTLKDL AEGKLDIVIG THQLVNKNVV FKDLGLLIVD EEQKFGVNVK DKLKTIAANV DTLTLTATPI PRTLQFSLMA ARDLSVITTP PPNRYPIETN VVGFNEEIIR DAISYEIQRN GQVFFINNRI ENIKEVAGMI QRLVPNARVG IGHGQMDGAK LEELMLGFMN GDFDVLVATT IIESGLDVPN ANTIFINNAN NFGLSDLHQM RGRVGRSNKK AFCYFICPPY SSMTEDARKR IQALEQFSEL GSGFNIAMKD LEIRGAGDLL GGEQSGFINE IGFDTYQKIM NEAIEELKEN EFKDLYPEEN DIDTKEYVKD IQIDADFELL FPDEYINNVS ERLVLYNELG AIKDEAGLQE FERKLIDRFG PLPKQATALL NSIRIKWIAT KVGIEKLVLK QGKMIGYFVS DQQSDYYQSV KFRNVLNFVQ KHSSLCKMKE KQTVNGLRLL LTFENVKSIK RALELMELFE E
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