| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ent638_3804 |
|---|
| Symbol | hofQ |
|---|
| ID | 5110848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Enterobacter sp. 638 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009436 |
|---|
| Strand | - |
|---|
| Start bp | 4100783 |
|---|
| End bp | 4102024 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640494013 |
|---|
| Product | outer membrane porin HofQ |
|---|
| Protein accession | YP_001178510 |
|---|
| Protein GI | 229577502 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4796] Type II secretory pathway, component HofQ |
|---|
| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0625572 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.855535 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAA CAAGGATAGT CAGCCTGCTA GCGCTGTTCA GCATGTCGGC CTGGAGCAGC
ACTCAAAAAC CAGTGACCCT GGTCGTTGAT GACGTACCGG TTGTTCAAGT TCTGCAGTCG
TTGGTCGAGC TGGAGAACCG CAACCTCATC GTTTCGCCTG ATGTCACCGG TACGCTGTCG
CTGCATTTAA CGCGCGTGCC CTGGCGGCAG GCGCTACAAA CCGTAGTCAC CAGCGCTGGG
CTGGTGTTGC GCGAGGAGCG CGGTATTTTT TATGTGAACA CCGCGGCGTG GCAACGTGAG
CAGCAGGCGC GTAATGAAGA GGAGAAAACC AGGCTGAAAC TGGATGTCCC GCTTGTCTCG
CGCGGCTATT CTCTGGCCTA TGCCGACGGT ACCGAATTAC AGAAATCTGC CGAGAAACAG
CTGAGCCCAA AAGGGAGTTT GTCAGTAGAC AAACGCACAA ATCGATTGCT GGTGCGCGAT
ATTCCCGCAG TGCTTGATAA TTTTCAGCAG TGGGTGAAAG AGATGGATCT GCCTATCGCT
CAGGTGCAGT TGGAAGCGCA TATCGTCACG ATAAATGAAA AAAGCCTGCG TGAGCTTGGC
GTGAAATGGA ATCTTGCAGA GGCGCAAGGT GCTGGGGCAC CGGGACAAGT CACCACGATG
GGTGCCGATC TTTCAGTCGC CAATGCCACG ACACATGTTG GATTCAACAT CGGTCGAATC
GACGGCAGAC TTTTGGATCT GGAGCTTTCC GCCCTCGAGC AAAAGCAACA GCTGGAGATC
ATTGCCAGTC CGCGCCTGTT GGCGTCGCAC ATGCAGCCAG CCAGCATTAA ACAGGGCAGC
GAAATTCCTT ACCAGGTTTC CAGTGGGGAC AGTGGGGCGA CATCGGTAGA ATTTAAAGAG
GCGGTTTTGG GCATGGAAGT GACGCCAGTG GTGCTTCCAA ACGGTCGGGT GCGTTTAAAA
CTGCGTATCA GCGAAAATAT GCCGGGGCAA GTTTTACAGC AGGCTGACGG TGAAACGCTG
GCGATTGATA AGCAGGAGAT CGAAACGCAG GTCGAAGTGA AAAGTGGAGA AACGCTGGCA
CTGGGCGGTA TTTTCTCTCA AAAGAATAAA ACGGCAAGCG ATAGCGTACC GGGTCTCGGG
CATGTTCCCC TGTTGGGCCA GTTTTTCCGC CATGACGGCA AAGATAACGA GCGCCGCGAG
CTGGTGGTGT TTATTACGCC ACGTTTGATT GATATTCAGT AA
|
|---|
| Protein sequence | MKITRIVSLL ALFSMSAWSS TQKPVTLVVD DVPVVQVLQS LVELENRNLI VSPDVTGTLS
LHLTRVPWRQ ALQTVVTSAG LVLREERGIF YVNTAAWQRE QQARNEEEKT RLKLDVPLVS
RGYSLAYADG TELQKSAEKQ LSPKGSLSVD KRTNRLLVRD IPAVLDNFQQ WVKEMDLPIA
QVQLEAHIVT INEKSLRELG VKWNLAEAQG AGAPGQVTTM GADLSVANAT THVGFNIGRI
DGRLLDLELS ALEQKQQLEI IASPRLLASH MQPASIKQGS EIPYQVSSGD SGATSVEFKE
AVLGMEVTPV VLPNGRVRLK LRISENMPGQ VLQQADGETL AIDKQEIETQ VEVKSGETLA
LGGIFSQKNK TASDSVPGLG HVPLLGQFFR HDGKDNERRE LVVFITPRLI DIQ
|
|---|
| |