| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_1185 |
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| Symbol | |
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| ID | 6066794 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | - |
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| Start bp | 1298836 |
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| End bp | 1300848 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641600601 |
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| Product | NifA subfamily transcriptional regulator |
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| Protein accession | YP_001724179 |
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| Protein GI | 170019225 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.132433 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTATGT CAGACGAGGC GATGTTTGCC CCGCCGCAAG GAATAACAAT TGAAGCGGTA
AACGGAATGC TCGCGGAGCG GTTAGCGCAG AAACACGGTA AGGCGTCTTT ATTACGCGCC
TTCATCCCGC TGCCGCCGCC GTTCAGCCCG GTACAACTTA TTGAACTGCA TGTTCTCAAA
AGCAACTTCT ATTACCGCTA CCATGATGAT GGCAGCGATG TGACGGCAAC AACAGAGTAT
CAGGGCGAGA TGGTCGATTA TTCGCGTCAC GCCGTCCTTC TCGGCAGTAG TGGAATGGCG
GAGCTACGCT TTATTCGCAC CCACGGCAGT CGTTTTACTC CCCAGGATTG CACACTGTTT
AACTGGCTGG CGCGGATAAT CACCCCGGTT CTACAATCAT GGCTCAATGA TGAAGAACAG
CAGGTGGCGC TGCGTTTGCT GGAGAAAGAT CGCGATCATC ATCGGGTACT GGTTGATATT
ACTAATGCAG TGCTGTCACA TCTTGATCTC GACGATCTGA TCGCTGACGT CGCTCGTGAG
ATCCATCATT TTTTCGGTCT GGCTTCAGTC AGTATGGTAC TGGGCGATCA TCGAAAGAAC
GAGAAGTTTA GCCTGTGGTG CAGCGATCTT TCTGCCTCAC ATTGTGCGTG TCTGCCACGC
AATATGCCTG GCGACAGTGT ATTGCTGACA CAAACGCTAC AAACCCGACA ACCGACCTTG
ACGCACCGTG CAGACGATCT GTTTCTCTGG CAACGCGACC CGTTATTACT CTTACTTGCA
TCTAACGGCT GCGAATCTGC GCTCCTTATA CCGCTTACCT TTGGCAACCA TACACCGGGT
GCATTGTTGC TGGCGCATAC CTCTTCCACT CTCTTTAGTG AGGAAAACTG CCAGCTACTA
CAACACATAG CCGATCGCAT CGCTATTGCC GTTGGCAATG CCGATGCCTG GCGTAGCATG
ACCGATTTGC AGGAAAGTTT GCAGCAAGAA AACCACCAGC TTAGCGAGCA GCTCCTTTCG
AATCTGGGCA TCGGTGACAT TATCTATCAA AGCCAGGCAA TGGAAGACCT ACTCCAGCAG
GTAGATATTG TGGCGAAGAG CGACAGTACG GTGTTGATTT GCGGTGAAAC CGGAACCGGC
AAAGAGGTGA TCGCCAGAGC GATCCATCAA CTTAGCCCGC GACGCGACAA GCCGCTGGTC
AAAATCAACT GCGCTGCCAT CCCCGCCAGT CTTCTGGAAA GTGAGTTATT CGGTCATGAC
AAAGGGGCGT TTACTGGTGC GATTAATACC CATCGTGGTC GTTTTGAAAT TGCCGATGGC
GGCACGTTGT TTCTCGATGA AATTGGCGAT CTGCCGTTAG AACTTCAGCC TAAACTGCTG
CGCGTATTGC AGGAACGGGA GATTGAGCGT CTCGGCGGGA GTAGAACGAT CCCGGTAAAT
GTCAGAGTCA TTGCCGCCAC CAACCGTGAT TTGTGGCAAA TGGTTGAAGA TCGCCAGTTT
CGCAGCGATC TCTTTTATCA CCTGAATGTC TTCCCACTGG AATTGCCGCC GCTGCGCGAC
CGTCCGGAAG ATATCCCTCT TTTAGCAAAG CATTTCACGC AAAAAATGGC GCGCCATATG
AATCGCGCAA TTGACGCCAT CCCGACCGAG GCACTACGCC AGTTGATGTC GTGGGATTGG
CCGGGCAACG TGCGCGAGCT GGAAAACGTG ATTGAGCGGG CGGTACTGTT GACTCGTGGT
AACAGTCTGA ATTTACATCT AAATGTCCGA CAAAGCCGTT TACTGCCGAC GCTAAATGAA
GATTCAGCGC TTCGCAGTTC AATGGCGCAG TTGCTGCACC CGACGACGCC AGAGAATGAC
GAAGAAGAAC GTCAGCGCAT TGTTCAGGTA TTGCGAGAAA CCAATGGCAT TGTTGCCGGG
CCCCGTGGCG CGGCGACACG ATTAGGGATG AAGCGCACCA CGCTGCTGTC ACGAATGCAG
CGTCTGGGGA TCTCGGTTCG CGAGGTGTTG TAA
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| Protein sequence | MAMSDEAMFA PPQGITIEAV NGMLAERLAQ KHGKASLLRA FIPLPPPFSP VQLIELHVLK
SNFYYRYHDD GSDVTATTEY QGEMVDYSRH AVLLGSSGMA ELRFIRTHGS RFTPQDCTLF
NWLARIITPV LQSWLNDEEQ QVALRLLEKD RDHHRVLVDI TNAVLSHLDL DDLIADVARE
IHHFFGLASV SMVLGDHRKN EKFSLWCSDL SASHCACLPR NMPGDSVLLT QTLQTRQPTL
THRADDLFLW QRDPLLLLLA SNGCESALLI PLTFGNHTPG ALLLAHTSST LFSEENCQLL
QHIADRIAIA VGNADAWRSM TDLQESLQQE NHQLSEQLLS NLGIGDIIYQ SQAMEDLLQQ
VDIVAKSDST VLICGETGTG KEVIARAIHQ LSPRRDKPLV KINCAAIPAS LLESELFGHD
KGAFTGAINT HRGRFEIADG GTLFLDEIGD LPLELQPKLL RVLQEREIER LGGSRTIPVN
VRVIAATNRD LWQMVEDRQF RSDLFYHLNV FPLELPPLRD RPEDIPLLAK HFTQKMARHM
NRAIDAIPTE ALRQLMSWDW PGNVRELENV IERAVLLTRG NSLNLHLNVR QSRLLPTLNE
DSALRSSMAQ LLHPTTPEND EEERQRIVQV LRETNGIVAG PRGAATRLGM KRTTLLSRMQ
RLGISVREVL
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