Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_A0073 |
Symbol | sopA |
ID | 6106519 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010488 |
Strand | - |
Start bp | 54635 |
End bp | 55810 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641614820 |
Product | plasmid-partitioning protein SopA |
Protein accession | YP_001739961 |
Protein GI | 170650895 |
COG category | [D] Cell cycle control, cell division, chromosome partitioning |
COG ID | [COG1192] ATPases involved in chromosome partitioning |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 44 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0000728582 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTCAGAA TGAGACTCAT GGAAACACTT AACCAGTGCA TAAACGCTGG TCATGAAATG ACGAAGGCTA TCGCCATTGC ACAGTTTAAT GATGACAGCC CGGAAGCGAG GAAAATCACC CGACGCTGGA GAATAGGTGA AGCAGCGGAT TTAGTTGGAG TATCTTCTCA GGCTATCAGG GATGCCGAGA AAGCAGGCCG GCTACCGCAC CCGGATATGG AAATACGAGG ACGGGTTGAG CAACGTGTTG GTTATACAAT TGAACAAATT AATCATATGC GTGACGTGTT TGGTACGAGA CTACGACGTG CTGAAGACGT ATTTCCGCCG GTGATTGGAG TTGCTGCTCA TAAAGGGGGC GTTTACAAAA CCTCTGTTTC TGTTCATCTT GCTCAGGATC TGGCTCTGAA GGGATTACGT GTTCTGCTCG TGGAAGGTAA CGACCCCCAG GGAACAGCAT CGATGTATCA CGGCTGGGTG CCAGATCTTC ATATTCATGC AGAGGATACT CTCCTTCCCT TCTATCTTGG GGAAAAGGAC GATGTCACTT ATGCAATAAA GCCTACTTGC TGGCCTGGGC TTGACATTAT TCCTTCCTGT TTGGCTCTGC ACCGCATTGA AACTGAGCTA ATGGGCAAAT TTGATGAAGG TAAATTGCCC ACCGATCCAC ACCTGATGCT CCGACTGGCC ATTGAAACCG TCGCTCATGA CTATGATGTC ATTGTCATTG ACAGCGCGCC TAACCTAGGT ATCGGCACGA TTAATGTTGT ATGTGCTGCT GATGTGTTGA TTGTCCCCAC GCCTGCTGAG TTGTTCGACT ACACTTCCGC TCTGCAGTTT TTCGATATGC TTCGTGATCT GCTCAAAAAC GTAGATCTTA AAGGATTCGA GCCTGATGTA CGTATTTTGC TTACCAAATA CAGTAATAGT AATGGTTCTC AGTCCCCGTG GATGGAGGAG CAAATTCGGG ACGCCTGGGG AAGCATGGTC CTAAAAAATG TTGTGCGTGA AACGGATGAA GTTGGTAAAG GTCAGATCCG GATGAGAACT GTTTTTGAAC AGGCTATTGA TCAACGCTCT TCAACAGGTG CCTGGAGAAA TGCCCTTTCT ATTTGGGAAC CTGTCTGCAA TGAAATTTTC GATCGTTTGA TTAAACCACG CTGGGAGATT AGATAA
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Protein sequence | MFRMRLMETL NQCINAGHEM TKAIAIAQFN DDSPEARKIT RRWRIGEAAD LVGVSSQAIR DAEKAGRLPH PDMEIRGRVE QRVGYTIEQI NHMRDVFGTR LRRAEDVFPP VIGVAAHKGG VYKTSVSVHL AQDLALKGLR VLLVEGNDPQ GTASMYHGWV PDLHIHAEDT LLPFYLGEKD DVTYAIKPTC WPGLDIIPSC LALHRIETEL MGKFDEGKLP TDPHLMLRLA IETVAHDYDV IVIDSAPNLG IGTINVVCAA DVLIVPTPAE LFDYTSALQF FDMLRDLLKN VDLKGFEPDV RILLTKYSNS NGSQSPWMEE QIRDAWGSMV LKNVVRETDE VGKGQIRMRT VFEQAIDQRS STGAWRNALS IWEPVCNEIF DRLIKPRWEI R
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