| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_A0029 |
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| Symbol | traC |
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| ID | 6106572 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010488 |
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| Strand | - |
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| Start bp | 27072 |
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| End bp | 29699 |
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| Gene Length | 2628 bp |
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| Protein Length | 875 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641614776 |
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| Product | conjugal transfer ATP-binding protein TraC |
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| Protein accession | YP_001739917 |
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| Protein GI | 170650779 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR02746] type-IV secretion system protein TraC |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATAACC CACTTGAGGC CGTCACTCAG GCGGTTAACT CCCTCGTCAC AGCACTGAAA
CTGCCTGACG AATCCGCAAA GGCCAATGAA GTTCTGGGCG AAATGAGCTT CCCGCAGTTC
AGCCGTCTGC TGCCGTACCG TGATTACAAC CAGGAATCCG GTCTGTTCAT GAATGACACC
ACGATGGGCT TTATGCTGGA AGCCATTCCC ATCAATGGGG CGAATGAGTC CATTGTGGAG
GCGCTCGACC ACATGCTGCG CACCAAACTG CCGCGCGGAG TGCCGTTCTG CATCCATCTG
ATGTCCAGTC AGCTTGTTGG TGACAGGATT GAATACGGGC TGCGTGAGTT CTCCTGGTCA
GGTGAACAGG CTGAACGGTT TAACGCCATT ACCCGTGCCT ATTATATGAA CGCGGCAGCG
ACACAGTTTC CGCTGCCGGA GGGAATGAAT CTGCCCCTGA CCCTGCGCCA TTACCGGGTG
TTTATCTCGT ACTGTTCTCC CTCGAAGAAA AAAAGCCGGG CCGACATTCT GGAAATGGAA
AACCTGGTGA AAATCATCCG GGCGTCGTTA CAGGGGGCCA GTATCACCAC ACAGGCGGTG
GATGCACAGG CCTTTATCGA TATTGTCGGG GAGATGATTA ACCATAACCC GGACTCCCTG
TATCCGAAAA GACGTCAGCT GGACCCGTAT TCTGATCTGA ATTATCAGTG TGTGGAGGAC
AGTTTTGACC TGAAAGTCCG GGCGGATTAC CTGACGCTGG GCCTGCGTGA GAACGGCAGG
AACAGCACGG CCCGCATCCT GAATTTCCAT CTGGCCCGTA ACCCGGAAAT CGCCTTCCTG
TGGAACATGG CCGACAACTA CAGCAACCTG CTGAACCCGG AACTGTCCAT CTCCTGTCCG
TTCATCCTGA CGCTGACTCT GGTGGTGGAA GACCAGGTGA AAACTCACAG CGAAGCCAAC
CTGAAGTACA TGGACCTGGA GAAAAAGTCG AAGACCTCCT ATGCCAAATG GTTTCCGTCC
GTGGAGAAAG AGGCGAAGGA GTGGGGGGAA CTGCGTCAGC GGCTGGGCTC CGGTCAGTCC
TCTGTCGTGT CCTACTTCCT CAACATCACA GCATTCTGCA AGGACAATAA TGAAACGGCG
CTGGAAGTGG AGCAGGACAT CCTGAACAGC TTCCGTAAAA ACGGTTTTGA GCTGATTTCA
CCGCGCTTTA ACCACATGCG CAATTTCCTG ACCTGTCTGC CCTTTATGGC CGGGAAAGGG
TTGTTTAAAC AGCTGAAAGA GGCCGGAGTG GTACAGCGCG CAGAGAGCTT TAATGTGGCC
AACCTGATGC CGTTAGTGGC GGATAACCCC CTGACACCGG CAGGTCTGCT GGCACCCACC
TACCGTAACC AGCTGGCGTT TATCGATATT TTCTTCCGGG GGATGAATAA CACCAACTAC
AACATGGCGG TCTGTGGCAC CTCCGGGGCC GGTAAAACCG GGCTGATACA GCCACTTATC
CGCAGCGTGC TGGACTCCGG GGGCTTTGCC GTGGTGTTCG ACATGGGGGA TGGCTACAAG
TCCCTGTGTG AGAACATGGG GGGCGTATAT CTGGACGGTG AAACCCTGCG TTTTAACCCG
TTTGCGAACA TCACCGATAT TGACCAGTCA GCGGAGCGTG TCCGCGACCA GTTGTCGGTG
ATGGCCAGCC CCAACGGTAA CCTGGATGAA GTGCATGAAG GTCTGCTGCT GCAGGCGGTC
AGGGCCTCCT GGCTGGCTAA AAAGAATAAG GCGCGCATCG ATGATGTGGT GGATTTCCTG
AAAAACGCCC GTGATAACGA CCAGTATGTA GAGTCACCGA CTATCCGCAG CCGTCTGGAC
GAAATGATTG TGCTGCTTGA CCAGTACACT GCCAACGGCA CTTATGGCCA GTATTTCAAC
TCCGATGAGC CGTCCCTGCG GGATGATGCG AAAATGGTGG TGCTGGAGCT GGGCGGACTG
GAAGACCGTC CGTCCCTGCT GGTTGCGGTG ATGTTCAGCC TTATCATTTA CATTGAGAAC
CGGATGTACC GCACGCCGCG TAACCTCAAG AAACTGAACG TCATTGATGA AGGCTGGCGT
CTGCTGGACT TCAAAAATCA CAAGGTCGGT GAATTTATTG AGAAAGGTTA CCGTACCGCC
CGCCGTCATA CCGGTGCCTA TATCACCATC ACACAGAACA TCGTCGACTT TGACTCTGAC
AAGGCCTCCA GTGCTGCCCG CGCGGCATGG GGTAACTCCT CCTACAAAAT TATCCTCAAA
CAGAGTGCGA AGGAGTTCGC GAAATACAAC CAGCTGTATC CGGACCAGTT CCTGCCACTG
CAGCGCGACA TGATTGGTAA GTTTGGTGCA GCCAAAGACC AGTGGTTCAG TTCCTTCCTG
CTGCAGGTGG AAAACCATTC CTCCTGGCAC CGTCTGTTTG TGGACCCGTT AAGCCGCGCC
ATGTACAGCT CTGACGGCCC GGATTTTGAG TTTGTGCAGC AGAAACGTAA AGAGGGGCTG
AGTATTCATG AGGCGGTGTG GCAGCTGGCG TGGAAGAAGT CAGGGCCGGA GATGGCTTCG
CTGGAAGCCT GGCTGGAAGA ACATGAGAAA TACAGGAGTG TTGCATGA
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| Protein sequence | MNNPLEAVTQ AVNSLVTALK LPDESAKANE VLGEMSFPQF SRLLPYRDYN QESGLFMNDT
TMGFMLEAIP INGANESIVE ALDHMLRTKL PRGVPFCIHL MSSQLVGDRI EYGLREFSWS
GEQAERFNAI TRAYYMNAAA TQFPLPEGMN LPLTLRHYRV FISYCSPSKK KSRADILEME
NLVKIIRASL QGASITTQAV DAQAFIDIVG EMINHNPDSL YPKRRQLDPY SDLNYQCVED
SFDLKVRADY LTLGLRENGR NSTARILNFH LARNPEIAFL WNMADNYSNL LNPELSISCP
FILTLTLVVE DQVKTHSEAN LKYMDLEKKS KTSYAKWFPS VEKEAKEWGE LRQRLGSGQS
SVVSYFLNIT AFCKDNNETA LEVEQDILNS FRKNGFELIS PRFNHMRNFL TCLPFMAGKG
LFKQLKEAGV VQRAESFNVA NLMPLVADNP LTPAGLLAPT YRNQLAFIDI FFRGMNNTNY
NMAVCGTSGA GKTGLIQPLI RSVLDSGGFA VVFDMGDGYK SLCENMGGVY LDGETLRFNP
FANITDIDQS AERVRDQLSV MASPNGNLDE VHEGLLLQAV RASWLAKKNK ARIDDVVDFL
KNARDNDQYV ESPTIRSRLD EMIVLLDQYT ANGTYGQYFN SDEPSLRDDA KMVVLELGGL
EDRPSLLVAV MFSLIIYIEN RMYRTPRNLK KLNVIDEGWR LLDFKNHKVG EFIEKGYRTA
RRHTGAYITI TQNIVDFDSD KASSAARAAW GNSSYKIILK QSAKEFAKYN QLYPDQFLPL
QRDMIGKFGA AKDQWFSSFL LQVENHSSWH RLFVDPLSRA MYSSDGPDFE FVQQKRKEGL
SIHEAVWQLA WKKSGPEMAS LEAWLEEHEK YRSVA
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