| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_A0020 |
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| Symbol | traF |
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| ID | 6106466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010488 |
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| Strand | - |
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| Start bp | 20611 |
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| End bp | 21354 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641614767 |
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| Product | conjugal pilus assembly protein TraF |
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| Protein accession | YP_001739908 |
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| Protein GI | 170650828 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02739] type-F conjugative transfer system pilin assembly protein TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 0.458237 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATAAAG CATTACTGCC ACTGTTACTC TGCTGCTTTA TTTTTCCGGC GTCAGGAAAA
GATGCAGGCT GGCAGTGGTA TAACGAGAAA ATAAATCCGA AGGAAAAAGA AAATAAACCT
GTACCTGCAG CCCCCCGTCA GGAACCGGAT ATTATGCAGA AACTGGCCGC ACTGCAGACG
GCAACAAAGC GGGCGCTGTA CGAAGCCATT CTGTATCCCG GCGTGGATAA TTTTGTGAAA
TATTTCCGGC TGCAAAATTA CTGGACTCAG CAGGCCGGGC TTTTCACCAT GAGCGCCAGA
AAGGCCATGC TGGCACATCC TGAACTGGAC TATAACCTGC AGTACAGCCA TTACAACGGC
ACGGTACGGA ACCAGCTGGC AGCAGACCAG GCGCAGCAGC GACAGGCCAT TGCGAAACTG
GCTGAACACT ACGGCATCAT GTTTTTTTAC CGGGGGCAGG ACCCCATCGA CGGGCAGCTG
GCGCAGGTCA TTAATGGCTT CCGGGATACC TATGGTCTGA GTGTTATTCC CGTTTCCGTG
GATGGCGTGA TTAATCCGCT GTTGCCGGAT TCCCGGACTG ACCAGGGGCA GGCGCAGCGC
CTCGGCGTGA AATATTTCCC GGCCATGATG CTGGTTGACC CGAAACAGGG CAGTGTTCGC
CCGTTATCAT ACGGCTTTAT TTCGCAGGAC GACCTGGCAA AACAATTCCT GAACGTTTCT
GAAGATTTTA AACCCAATTT TTAA
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| Protein sequence | MNKALLPLLL CCFIFPASGK DAGWQWYNEK INPKEKENKP VPAAPRQEPD IMQKLAALQT
ATKRALYEAI LYPGVDNFVK YFRLQNYWTQ QAGLFTMSAR KAMLAHPELD YNLQYSHYNG
TVRNQLAADQ AQQRQAIAKL AEHYGIMFFY RGQDPIDGQL AQVINGFRDT YGLSVIPVSV
DGVINPLLPD SRTDQGQAQR LGVKYFPAMM LVDPKQGSVR PLSYGFISQD DLAKQFLNVS
EDFKPNF
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