| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_A0011 |
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| Symbol | traD |
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| ID | 6106602 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010488 |
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| Strand | - |
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| Start bp | 11124 |
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| End bp | 13295 |
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| Gene Length | 2172 bp |
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| Protein Length | 723 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641614758 |
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| Product | conjugal transfer protein TraD |
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| Protein accession | YP_001739899 |
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| Protein GI | 170650889 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | [TIGR02759] type IV conjugative transfer system coupling protein TraD |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.547678 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTA ACGCAAAGGA TATGACCCAG GGCGGTCAGA TTGCGTCCAT GCGTATCCGC
ATGTTCAGCC AGATCGCCAA TATCATGCTT TACTGCCTGT TTATTTTTTT CTGGATACTC
GTTGGTCTGG TTTTATGGGT AAAAATAAGC TGGCAGACGT TTGTGAACGG CTGTATTTAC
TGGTGGTGTA CCACGCTGGA AGGCATGCGG GATTTAATCA AGTCCCAGCC GGTATATGAG
ATCCAGTATT ACGGCAAAAC CTTCCGGATG AACGCTGCTC AGGTACTGCA TGATAAATAT
ATGATCTGGT GCGGAGAGCA GCTATGGTCC GCATTCGTTC TGGCCACAGT TGTGGCACTG
GTTATTTGCC TGATCACCTT CTTTGTTGTC TCCTGGATTC TGGGGCGTCA GGGTAAACAA
CAGAGCGAAA ATGAAGTCAC AGGTGGTCGT CAGCTGACAG ACAATCCGAA AGACGTTGCC
CGGATGCTGA AAAAAGACGG CAAGGATTCC GATATCCGGA TTGGCGACCT GCCGATTATC
CGGGATTCTG AAATCCAGAA CTTCTGTCTG CACGGCACGG TCGGGGCCGG TAAGTCGGAA
GTTATCCGTC GTCTGGCCAA CTACGCCCGT AAGCGTGGAG ATATGGTGGT GATTTATGAC
CGTTCAGGGG AATTTGTTAA AAGTTACTAT GATCCCTCCA TCGATAAAAT CCTGAATCCG
CTGGATGCCC GCTGTGCCGC CTGGGATTTA TGGAAGGAGT GTCTGACACA GCCGGATTTT
GATAATACGG CAAATACCCT GATCCCGATG GGCACAAAAG AGGACCCGTT CTGGCAGGGT
TCAGGACGTA CCATTTTTGC GGAAGCGGCG TACCTGATGC GTAATGACCC CAACCGCAGC
TACAGCAAAC TGGTGGACAC TCTGCTTTCC ATCAAAATCG AAAAACTGCG TACCTTCCTG
CGTAATTCAC CGGCGGCCAA CCTGGTGGAA GAGAAAATCG AGAAAACGGC GATTTCCATC
CGTGCTGTGC TGACCAACTA CGTGAAAGCC ATCCGTTACC TGCAGGGGAT TGAGCATAAC
GGTGAGCCCT TCACCATCCG TGACTGGATG CGTGGTGTCC GGGAAGATCA GAAAAACGGC
TGGCTGTTTA TCTCATCGAA CGCCGACACC CATGCCTCCC TGAAGCCTGT GATCTCCATG
TGGCTGTCCA TTGCCATTCG TGGTCTGCTG GCAATGGGAG AAAACCGTAA CCGTCGTGTG
TGGTTTTTCT GTGACGAGTT ACCCACGTTA CACAAACTGC CTGACCTGGT GGAGATCCTG
CCGGAAGCCC GTAAGTTCGG TGGCTGTTAT GTGTTTGGTA TCCAGTCCTA TGCCCAGCTG
GAAGATATCT ACGGTGAGAA AGCGGCTGCC ACGCTGTTTG ACGTCATGAA CACCCGTGCC
TTTTTCCGTT CTCCCAGCCA TAAGATTGCA GAGTTCGCTG CAGGTGAGAT TGGTGAGAAA
GAGCACCTGA AAGCCAGCGA GCAGTATTCC TACGGTGCTG ATCCGGTACG TGACGGGGTA
TCGACCGGTA AGGATATGGA GCGCCAGACG CTGGTCAGTT ATTCCGACAT TCAGTCTCTG
CCGGATCTGA CCTGTTATGT CACCCTGCCC GGACCGTATC CGGCAGTAAA ACTCTCTCTG
AAATATCAGA CACGACCGAA GGTCGCTCCG GAGTTTATTC CGCGTGACAT CAACCCGGAA
ATGGAGAACC GCCTGAGTGC CGTACTTGCC GCAAGGGAAG CAGAAGGTCG TCAGATGGCC
AGCCTCTTCG AACCGGATGT CCCGGAGGTT GTTTCCGGAG AAGACGTGAC TCAGGCTGAA
CAGCCGCAAC AGCCGCAACA GCCGCAACAG CCGGTGTCTC CTGCCATCAA CGATAAGAAG
TCAGATTCAG GTGTGAATGT TCCGGCAGGG GGGATCGAGC AGGAGCTGAA AATGAAACCG
GAAGAAGAGA TGGAACAGCA ACTGCCACCC GGGATCAGTG AATCCGGTGA AGTGGTGGAT
ATGGCCGCTT ATGAGGCATG GCAACAGGAA AATCATCCGG ACACCCAGCA GCAGATGCAG
CGTCGTGAAG AGGTGAACAT TAATGTGCAC CGGGAGCGCG GGGAGGATGT TGAGCCGGGA
GATGATTTCT GA
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| Protein sequence | MSFNAKDMTQ GGQIASMRIR MFSQIANIML YCLFIFFWIL VGLVLWVKIS WQTFVNGCIY
WWCTTLEGMR DLIKSQPVYE IQYYGKTFRM NAAQVLHDKY MIWCGEQLWS AFVLATVVAL
VICLITFFVV SWILGRQGKQ QSENEVTGGR QLTDNPKDVA RMLKKDGKDS DIRIGDLPII
RDSEIQNFCL HGTVGAGKSE VIRRLANYAR KRGDMVVIYD RSGEFVKSYY DPSIDKILNP
LDARCAAWDL WKECLTQPDF DNTANTLIPM GTKEDPFWQG SGRTIFAEAA YLMRNDPNRS
YSKLVDTLLS IKIEKLRTFL RNSPAANLVE EKIEKTAISI RAVLTNYVKA IRYLQGIEHN
GEPFTIRDWM RGVREDQKNG WLFISSNADT HASLKPVISM WLSIAIRGLL AMGENRNRRV
WFFCDELPTL HKLPDLVEIL PEARKFGGCY VFGIQSYAQL EDIYGEKAAA TLFDVMNTRA
FFRSPSHKIA EFAAGEIGEK EHLKASEQYS YGADPVRDGV STGKDMERQT LVSYSDIQSL
PDLTCYVTLP GPYPAVKLSL KYQTRPKVAP EFIPRDINPE MENRLSAVLA AREAEGRQMA
SLFEPDVPEV VSGEDVTQAE QPQQPQQPQQ PVSPAINDKK SDSGVNVPAG GIEQELKMKP
EEEMEQQLPP GISESGEVVD MAAYEAWQQE NHPDTQQQMQ RREEVNINVH RERGEDVEPG
DDF
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