| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4898 |
|---|
| Symbol | |
|---|
| ID | 6143804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 5017457 |
|---|
| End bp | 5018926 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641619701 |
|---|
| Product | solute/sodium symporter (SSS) family protein |
|---|
| Protein accession | YP_001746808 |
|---|
| Protein GI | 170682270 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0591] Na+/proline symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGTC ATATCTTTTT AGTCGGCTTT ATTATTTATG CCATCGCCAT GATTTGGCTT
GGTTGGTTTG TTTCTCGTAA TCAGAAAAGC GGAGAAGATT TTCTGCTGGG CGGGCGTTCG
CTGCCGCTGT TTCTGACGCT GGGGTCAACC GTTGCCACGA TGGTTGGCAC GGGTTCCAGT
ATGGGCGCAG TGGGCTTTGG CTACAGCAAT GGCTGGGCCG GAATGCTTTA TGGCGTCGGT
GGGGCCGTAG GTATATTACT GGTGGCGTGG CTGTTTGCAC CGGTACGTAA ATTACGATTT
ATGACCATGA GTGAAGAAAT ATCTTATTAT ACTGGCGGCA GCCATTTAAT TAAAAATATT
GTCGGCCTGA TGATATTTAT TGCCTCTATT GGCTGGCTGG GGGCGCATAT ATTAGGTGGA
AGTATGTATC TTGCCTGGGC AACAGGTATT GATCTTACGG TGGCAAAATT AATTATTGCC
TTAGCTTTTG CGATTTACGT TATTATCGGC GGTTATTCGG CGGTAGTGTG GACAGATACT
ATTCAGGCCC TAATTCTGTT CTTTGGCTTT ATATTAATGG CTATTCTTGC CGTTGTTCAC
GTTGGCGGCT GGAGTGCGAT TGAGCAGGCG ATGGACCCAA AAGCGATGAG CCTGTTTGCG
ATTGATAAAA TGGGCGTGCT GCCTGCGCTT TCGCTGGCAC TGGTTATTGG CGTAGGTGTG
CTGGCAACAC CGTCTTATCG CCAGCGTATT TACTCGGGTA AAGATGTTCC CTCTGTACGC
CGTTCGTTTG TTATTACTGG GGTGTTATAT CTGTTCTTCT CGATTTTGCC TGCCATTATC
GGCATGGCGG CGTTCACCAT GAACCCAAAT CTGGAAAACA GCAACTACGC CTTCTTGTTC
GCGACCAGTT TCTTACCTGC CATTCTTGGG CTGGTGGTGC TGATTGCCGG GCTTTCAGCC
ACCATGTCTT CTGCCAGCTC CGATGCCATC GCGGCGGTGG CGATTATGAT GCGCGACGTC
TACACCATGA TTACCGGCAG AATGCCGCCG GAGGATAAGG CAATCACTTA CTCACGCTGG
ATGTTGACCT TTGTTATTGG CCTGGCGCTG GTCTTTGCTC TGACCTCTAA CGACATCATC
AGCTACATTA CCAAAATGAT TTCGATGCTG ATGTCCGGGT TGTTTATCTG CTCGATTCTC
GGTCGCTTCT GGCTACGCTT TAACTGGCAG GGCGCGCTGG CGGCGTTAGT GAGTGGTATG
GTGATGTCAA TTGTGGTGCT GATGAATGCC GACTGGCTGG CTTACTGGGG TAACCCGTGT
ATTCCGTCAG TGCTGGGCAG CCTGGTCGCT GGCGTACTGG TGACGTTGGT AACGCCAGCA
AGTCAGGTCA GCCGGGAAGA AGCTTTGGCT ATTATCACCA ATGAGCGTGA AAACCAGAGT
GTCGTGATCA CCAAACCTGA AGAAGCATAA
|
|---|
| Protein sequence | MNSHIFLVGF IIYAIAMIWL GWFVSRNQKS GEDFLLGGRS LPLFLTLGST VATMVGTGSS
MGAVGFGYSN GWAGMLYGVG GAVGILLVAW LFAPVRKLRF MTMSEEISYY TGGSHLIKNI
VGLMIFIASI GWLGAHILGG SMYLAWATGI DLTVAKLIIA LAFAIYVIIG GYSAVVWTDT
IQALILFFGF ILMAILAVVH VGGWSAIEQA MDPKAMSLFA IDKMGVLPAL SLALVIGVGV
LATPSYRQRI YSGKDVPSVR RSFVITGVLY LFFSILPAII GMAAFTMNPN LENSNYAFLF
ATSFLPAILG LVVLIAGLSA TMSSASSDAI AAVAIMMRDV YTMITGRMPP EDKAITYSRW
MLTFVIGLAL VFALTSNDII SYITKMISML MSGLFICSIL GRFWLRFNWQ GALAALVSGM
VMSIVVLMNA DWLAYWGNPC IPSVLGSLVA GVLVTLVTPA SQVSREEALA IITNERENQS
VVITKPEEA
|
|---|
| |