| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4093 |
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| Symbol | lpfD |
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| ID | 6145107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 4186355 |
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| End bp | 4187425 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641618917 |
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| Product | long polar fimbrial operon protein LpfD |
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| Protein accession | YP_001746055 |
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| Protein GI | 170683702 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 0.234808 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGT ATATTATACA GTGGTGCTTT ACTGTTTTTA TCTTCTCCTT TAGTGGTGCA
ACATTTGCGG CCCCAAAAGG TATCTGCACC TCAGATAATG GGGCCTTTCA TAGCACACTT
GATTTTTCCG GCTATCTGAT TACGGCAGAC GAGAACAGAG TGGGAGAGAC CTTTAATAAA
ACCGTGACAA ATGGGGACTC TTATCCTGCT CACTGCCATT GTGATACAGG GAAAGTGGGG
GAGTTTCCTT ATATTTACTA TACAGCGAGA ATAAACGAGG CCTTAAGTTA TGCGGGTGTT
CGTTCTAATG TAAACTACTT TAATTTGAAT CCTAATCTGG ATGTTGGAAT ATCGATAGAC
CTTCTCGGTG TAGGATACAT TAATGCACCT TTTGAATACC ATGCTAACAG GCCTACTGGA
GGTTCATATA AATGTAGTCG CACGGACCCA TTAAGTATTT CCAGTGGTGC AAAAGCAATA
ATTTATTTTT ATATTAAGAA GACTTTTGCT GGAAAGTTAA TTGTCCCTGA AACGCTCGTG
GCAAAATTGT ACGGAACTAT AAGCCGTGAC ACTCCGGTTG ATTACTCACA ACCTATGGCG
GATGTTTATA TTCGTGGCGA TATCACTGCA CCGCAAAGCT GTGAAATTAA CAGTTTAAGA
CCCATTAATT TTGATTTTAA AGAAATTCCT GCAGCAGATT TTTCTTCGGT AGCTGGAAGT
ACCGTGACAA CGCATAAAAT TACCAAAACC GTCACCATTG AGTGTGAAAA TTTAGGAATA
CTAAATACTG ATGATATCAG TACCTCTTTT TATGCTACCG AACCCAGTAC TGACAACTCA
ATGGTCGTGA CATCAAACCC GAACGTTGGG ATAAAAATTT ATGATAAAAA TAATAAGGAA
ATCAACGTTA ACGGTGGTGA ACTGCCGACA GATATGGGTA AATCAAACGT CTTTGGTGAA
AAAGCCGGTA GCGTCACTTT TTCTGCTGCT CCTGCAAGCC TCACGGGGGC TCGCCCCGCG
CCAGGAACAT TTACCGCGAC TGCAACGATA ACAATTGAGA TTGTACGCTA A
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| Protein sequence | MNKYIIQWCF TVFIFSFSGA TFAAPKGICT SDNGAFHSTL DFSGYLITAD ENRVGETFNK
TVTNGDSYPA HCHCDTGKVG EFPYIYYTAR INEALSYAGV RSNVNYFNLN PNLDVGISID
LLGVGYINAP FEYHANRPTG GSYKCSRTDP LSISSGAKAI IYFYIKKTFA GKLIVPETLV
AKLYGTISRD TPVDYSQPMA DVYIRGDITA PQSCEINSLR PINFDFKEIP AADFSSVAGS
TVTTHKITKT VTIECENLGI LNTDDISTSF YATEPSTDNS MVVTSNPNVG IKIYDKNNKE
INVNGGELPT DMGKSNVFGE KAGSVTFSAA PASLTGARPA PGTFTATATI TIEIVR
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