Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1734 |
Symbol | ydcS |
ID | 6144278 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 1738437 |
End bp | 1739582 |
Gene Length | 1146 bp |
Protein Length | 381 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641616610 |
Product | ABC transporter, periplasmic substrate-binding protein |
Protein accession | YP_001743788 |
Protein GI | 170681458 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0000000404923 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCAAGA TTTTTGCCCG CAGCAGCCTG TGTGCGCTCA CCATGACAAT AATGACCGCT CACGCCGCCG AACCGCCTAC CAATTTAGAT AAACCGGAAG GGCGACTGGA TATTATCGCC TGGCCGGGAT ACATCGAACG CGGACAAACT GATAATCAAT ACGACTGGGT AACGCAATTC GAAAAAGAGA CAGGCTGCGC GGTGAATGTG AAAACCGCCG CGACTTCCGA TGAAATGGTC AGTCTGATGA CCAAAGGGGG TTACGATCTG GTTACGGCAT CCGGCGATGC CTCGCTGCGC CTGATTATGG GCAAACGCGT GCAGCCGATT AATACCGCAT TGATTCCCAA CTGGAAAGCG CTCGATCCGC GCGTGGTTAA AGGCGACTGG TTTAACGTTG GCGGCAAAGT TTACGGCACA CCTTACCAAT GGGGGCCGAA CCTGCTGATG TACAACACTA AAACCTTCCC GACGCCGCCG AATAGCTGGC AAGTGGTTTT TGTTGAGCAG AATCTGCCGG ACGGCAAGAG CAATAAAGGC CGCGTTCAGG CTTATGATGG CCCTATCTAC ATTGCGGACG CTGCGTTGTT CGTTAAAGCC ACTCAGCCGC AGTTGGGCAT CAGCGATCCG TATCAACTCA CCGAAGAACA GTACCAGGCG GTGCTGAAAG TGCTGCGCGA TCAACATAGT TTGATCCATC GCTACTGGCA TGACACTACC GTGCAAATGA GCGATTTCAA AAACGAGGGT GTAGTTGCTT CCAGTGCATG GCCCTATCAG GCCAACGCCC TGAAAGCCGA AGGCCAGCCT GTCGCTACCG TTTTCCCGAA AGAGGGCGTT ACCGGTTGGG CTGACACCAC CATGCTACAT AGCGAAGCGA AACATCCGGT TTGCGCCTAC AAATGGATGA ACTGGTCATT AACCCCAAAA GTGCAGGGCG ATGTGGCGGC CTGGTTTGGC TCGCTACCAG TAGTGCCGCA AGGGTGTAAA GCCAGTCCGT TATTAGGCGA GAAAGGTTGT GAAACAAACG GTTTTAACTA TTTCGATAAA ATCGCCTTCT GGAAAACGCC TATAGCAGAA GGGGGCAAGT TTGTTCCCTA CAGTCGCTGG ACGCAGGATT ACATTGCCAT TATGGGTGGT CGCTAA
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Protein sequence | MSKIFARSSL CALTMTIMTA HAAEPPTNLD KPEGRLDIIA WPGYIERGQT DNQYDWVTQF EKETGCAVNV KTAATSDEMV SLMTKGGYDL VTASGDASLR LIMGKRVQPI NTALIPNWKA LDPRVVKGDW FNVGGKVYGT PYQWGPNLLM YNTKTFPTPP NSWQVVFVEQ NLPDGKSNKG RVQAYDGPIY IADAALFVKA TQPQLGISDP YQLTEEQYQA VLKVLRDQHS LIHRYWHDTT VQMSDFKNEG VVASSAWPYQ ANALKAEGQP VATVFPKEGV TGWADTTMLH SEAKHPVCAY KWMNWSLTPK VQGDVAAWFG SLPVVPQGCK ASPLLGEKGC ETNGFNYFDK IAFWKTPIAE GGKFVPYSRW TQDYIAIMGG R
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