| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1659 |
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| Symbol | lsrA |
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| ID | 6145712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1646597 |
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| End bp | 1648132 |
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| Gene Length | 1536 bp |
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| Protein Length | 511 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641616535 |
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| Product | autoinducer-2 ABC transporter, ATP-binding protein LsrA |
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| Protein accession | YP_001743713 |
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| Protein GI | 170679722 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 0.935771 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAACGA GTGATACCCG CGCGTTACCG CTACTTTGCG CCCGCTCGGT TTATAAACAG
TATTCAGGAG TTAATGTCCT GAAAGGCATC GATTTTACGT TGCATCAGGG GGAGGTCCAC
GCCCTGCTCG GCGGCAATGG TGCCGGTAAA TCGACGTTAA TGAAGATTAT TGCCGGTATT
ACCCCTGCTG ATAGCGGTAC GCTGGAGATT GGGGGCAACA ACTACGTCAG ATTAACGCCA
GTTCATGCTC ATCAGCTGGG CATTTATCTC GTTCCCCAGG AACCGCTGCT TTTTCCAAGC
CTGTCGATAA AAGAAAACAT CCTGTTTGGT CTGGCAAAAA AACAGCTCTC CATACAGAAA
ATGAATAACT TGCTGGCGGC GCTGGGCTGC CAGTTTGATC TGCATAGTCT GGCAGGATCG
CTGGATGTCG CCGATCGCCA AATGGTGGAA ATCCTCCGCG GGCTGATGCG CGATTCGCGA
ATTCTGATCC TCGATGAACC TACCGCCTCG CTTACTCCCG CCGAAACCGA ACGTTTGTTT
ATTCGCTTGC GGGAGCTGCT TGCTACTGGC GTGGGTATTG TTTTTATCTC GCATAAGCTG
CCGGAAATTC GCCAGATTGC CGACCGAATT AGCGTGATGC GCGACGGAAC CATCGCCTTA
AGCGGCAAAA CCAGCGAACT GTCTACCGAC GACATTATTC AGGCCATTAC GCCAGCGCTA
CGGGAAAAAT CGCTCTCTGC CAGCCAAAAA TTATGGCTGG AATTACCTGG CAACCGCCCA
CAACATGCCG CGGGAACGCC GGTGCTGACA CTGGAAAATC TGACCGGCGA AGGTTTCAGG
AATGTCAGCC TGACGCTCAA TGCCGGAGAA ATTCTGGGCC TGGCTGGGCT GGTGGGAGCC
GGACGCACAG AACTGGCCGA GACGCTCTAT GGTCTGCGTA CTTTGCGTGG CGGACGCATT
ATGCTGAATG GTAAAGAGAT CAATAGATTA TCCACCGGAG AACGTTTACT GCGCGGTCTG
GTTTATCTGC CGGAAGATCG CCAGTCATCC GGACTTAATC TCGATGCTTC ACTGGCGTGG
AACGTCTGCG CCCTTACTCA TAACCTTCGT GGATTCTGGG CGAAAACCGC GAAAGATAAT
GCCACCCTGG AACGATATCG TCGGGCGCTG AATATTAAAT TTAACCAACC GGAACAAGCT
GCGCGGACCT TATCCGGCGG CAACCAGCAA AAAATCCTGA TTGCCAAATG CCTGGAAGCC
TCGCCGCAAG TATTGATTGT CGATGAGCCG ACGCGCGGCG TGGATGTCTC GGCGCGTAAT
GATATCTACC AACTGTTGCG CAGCATCGCC GCACAGAATG TGGCTGTGCT GCTTATCTCC
TCTGATCTCG AAGAGATCGA ACTGATGGCA GATCGCGTGT ATGTGATGCA TCAGGGCGAA
ATTGCCCACT CTGCACTGAC CGGGCGCGAT ATTAATGTCG AGACCATTAT GCGCGTTGCC
TTCGGCGATA GTCAGCGTCA GGAGGCGTCA TGCTGA
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| Protein sequence | MQTSDTRALP LLCARSVYKQ YSGVNVLKGI DFTLHQGEVH ALLGGNGAGK STLMKIIAGI
TPADSGTLEI GGNNYVRLTP VHAHQLGIYL VPQEPLLFPS LSIKENILFG LAKKQLSIQK
MNNLLAALGC QFDLHSLAGS LDVADRQMVE ILRGLMRDSR ILILDEPTAS LTPAETERLF
IRLRELLATG VGIVFISHKL PEIRQIADRI SVMRDGTIAL SGKTSELSTD DIIQAITPAL
REKSLSASQK LWLELPGNRP QHAAGTPVLT LENLTGEGFR NVSLTLNAGE ILGLAGLVGA
GRTELAETLY GLRTLRGGRI MLNGKEINRL STGERLLRGL VYLPEDRQSS GLNLDASLAW
NVCALTHNLR GFWAKTAKDN ATLERYRRAL NIKFNQPEQA ARTLSGGNQQ KILIAKCLEA
SPQVLIVDEP TRGVDVSARN DIYQLLRSIA AQNVAVLLIS SDLEEIELMA DRVYVMHQGE
IAHSALTGRD INVETIMRVA FGDSQRQEAS C
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