| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1569 |
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| Symbol | rnfD |
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| ID | 6146430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1552654 |
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| End bp | 1553712 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641616446 |
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| Product | electron transport complex protein RnfD |
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| Protein accession | YP_001743624 |
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| Protein GI | 170682943 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
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| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.08013 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTATTCA GAATAGCTAG CTCCCCTTAT ACCCATAACC AGCGCCAGAC ATCGCGCATT
ATGCTGTTGG TGTTGCTCGC AGCCGTGCCA GGAATCGCAG CGCAACTGTG GTTTTTTGGT
TGGGGTACTC TCGTTCAGAT CCTGTTGGCG TCGGTCAGTG CTCTGTTAGC CGAAGCTCTC
GTACTCAAAC TACGCAAGCA GTCGGTAGCC GCAACGTTGA AAGATAACTC AGCATTGCTG
ACAGGCTTAT TGCTGGCGGT AAGTATTCCC CCCCTCGCGC CATGGTGGAT GGTCGTGCTG
GGTACGGTGT TTGCGGTGAT CATCGCTAAA CAATTGTATG GCGGTCTGGG GCAAAACCCG
TTTAATCCGG CAATGATTGG TTATGTGGTC TTACTGATCT CCTTCCCGGT GCAGATGACC
AGCTGGTTAC CGCCACATGA AATTGCGGTC AACATCCCTG GTTTTATCGA CGCCATACAG
GTTATTTTCA GCGGACATAT CACCAGTGGT GGTGATATGA ACACGCTACG CTTAGGTATT
GATGGCATTA GTCAGGCGAC ACCGCTGGAT ACATTTAAAA CCTCTGTCCG TGCCGGTCAT
TCGGTTGAAC AGATTATGCA ATATCCGATC TACAGCGGTA TGCTGGCGGG CGTTGGTTGG
CAATGGGTAA ATCTCGCCTG GCTGGCTGGC GGCGTATGGT TGCTGTGGCA GAAAGCGATT
CGCTGGCATA TTCCCCTCAG CTTCTTAGTA ACGCTGGCGT TATGCGCAAC GTTGGGCTGG
TTGTTCTCAC CAGAAACACT GGCAGCACCG CAAATTCATC TGCTGTCTGG AGCGACCATG
CTCGGCGCAT TCTTTATTTT GACTGACCCG GTTACCGCTT CTACGACCAA TCGTGGTCGT
CTTATTTTCG GCGCGCTGGC GGGCTTATTA GTCTGGTTGA TCCGCAGTTT CGGCGGCTAT
CCTGACGGCG TGGCTTTTGC CGTCCTGCTG GCGAACATCA CGGTTCCTCT GATCGATTAC
TACACGCGTC CGCGCGTCTA CGGCCATCGC AAAGGGTAA
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| Protein sequence | MVFRIASSPY THNQRQTSRI MLLVLLAAVP GIAAQLWFFG WGTLVQILLA SVSALLAEAL
VLKLRKQSVA ATLKDNSALL TGLLLAVSIP PLAPWWMVVL GTVFAVIIAK QLYGGLGQNP
FNPAMIGYVV LLISFPVQMT SWLPPHEIAV NIPGFIDAIQ VIFSGHITSG GDMNTLRLGI
DGISQATPLD TFKTSVRAGH SVEQIMQYPI YSGMLAGVGW QWVNLAWLAG GVWLLWQKAI
RWHIPLSFLV TLALCATLGW LFSPETLAAP QIHLLSGATM LGAFFILTDP VTASTTNRGR
LIFGALAGLL VWLIRSFGGY PDGVAFAVLL ANITVPLIDY YTRPRVYGHR KG
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