| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1150 |
|---|
| Symbol | |
|---|
| ID | 6143687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1173551 |
|---|
| End bp | 1174576 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641616028 |
|---|
| Product | phage integrase family site specific recombinase |
|---|
| Protein accession | YP_001743215 |
|---|
| Protein GI | 170682438 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000198353 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000000000000625111 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAGAC GAAGGAAAAA TCCTGAACAC GAAAAATTAC CTCCAAATGT ATACCCAAAT
AAATATAGTT ATGTATGGAA ACCAACATCC AGAGAATCTG TCACACTAAC CGCCATCAAG
GATGGTTTAG CTGCTTTATG GAAAAAGTAT GAGGAAACTG TAAATAATCG CGATCGTGCA
ATGACATTCG GTCGCTTGTG GGAAAAATTC CTCGCCAGCG CCTATTACAG TGACCTTAGT
CCAAGAACAC AAAAAGATTA TCTGCAACAT CAAAAAAAGT TGCTTGCCGT ATTCGGTAAG
GTACCAGCGG ATTCCATAAA ACCAGAACAC ATCCGTCGAT ACATGGACAA AAGAGGGGAG
CAGAGTAAAA CGCAAGCCAA CCATGAAAAA AGCAGTATGT CCCGTGTTTA CAGTTGGGGG
TATGAGCGAG GGTACGTGAA GGCTAACCCA TGTGCAGGTG TAAGTAAATT CAAGGCCAAA
AACCGCGAAC GATATGTAAC CGACAAAGAA TACCAGGCAG TATTAAGCGT TGCACCTCTT
CCTGTTTTTA TCGCAATGGA AATTGCCTAT CTGTGTGCAG CGAGGGTTTC CGATGTGTTA
TCGCTGAAAT GGGAACAGAT TGGAAACGAC GGGATATTCA TCCAGCAAGG GAAAACCGGA
AAAAAACAGA TAAAAGCATG GAGTCCACGA TTACAGGCAG CGATCGAAAA AGCAAAACAG
TTACCAAAAT CTGCCTATGT GATCAGCAAT CAATACGGCA ACCGATATAT GTACAAAGGC
TTTAACGAAA TGTGGGTAGA TGCAAGAAAT CGTGCTGGAA AAATTTCAGG TATTTTAACC
GACTTCACCT TTCATGATCT GAAGGCGAAA GGAATTTCAG ACTATGAAGG AAGCAGCCGG
GATAAGCAAC TTTTCTCTGG TCACAAAACC GAAGGGCAAG TGCTAATCTA TGACAGGAAG
GTTAAAGTTT CACCAACACT TGATGTCCCG TTACCTGAAA ATATTCCAAG AAAATATTCC
AAGTAA
|
|---|
| Protein sequence | MGRRRKNPEH EKLPPNVYPN KYSYVWKPTS RESVTLTAIK DGLAALWKKY EETVNNRDRA
MTFGRLWEKF LASAYYSDLS PRTQKDYLQH QKKLLAVFGK VPADSIKPEH IRRYMDKRGE
QSKTQANHEK SSMSRVYSWG YERGYVKANP CAGVSKFKAK NRERYVTDKE YQAVLSVAPL
PVFIAMEIAY LCAARVSDVL SLKWEQIGND GIFIQQGKTG KKQIKAWSPR LQAAIEKAKQ
LPKSAYVISN QYGNRYMYKG FNEMWVDARN RAGKISGILT DFTFHDLKAK GISDYEGSSR
DKQLFSGHKT EGQVLIYDRK VKVSPTLDVP LPENIPRKYS K
|
|---|
| |