| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A1610 |
|---|
| Symbol | sotB |
|---|
| ID | 5592684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | + |
|---|
| Start bp | 1633850 |
|---|
| End bp | 1635040 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640920762 |
|---|
| Product | sugar efflux transporter |
|---|
| Protein accession | YP_001458318 |
|---|
| Protein GI | 157161000 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 54 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAA ACACTGTTTC CCGCAAAGTG GCGTGGCTAC GGGTCGTTAC GCTGGCAGTC
GCCGCCTTCA TCTTCAACAC CACCGAATTT GTCCCTGTTG GCCTGCTCTC TGACATTGCG
CAAAGTTTTC ACATGCAAAC CGCTCAGGTC GGCATCATGT TGACCATTTA CGCATGGGTA
GTAGCGCTAA TGTCATTGCC TTTTATGTTA ATGACCAGTC AGGTTGAACG GCGCAAATTA
CTGATCTGCC TGTTTGTGGT GTTTATTGCC AGCCACGTAC TGTCGTTTTT GTCGTGGAGC
TTTACCGTTC TGGTGATCAG TCGCATTGGT GTGGCTTTTG CACATGCGAT TTTCTGGTCG
ATTACGGCGT CTCTGGCGAT CCGTATGGCT CCGGCCGGGA AGCGAGCACA GGCATTGAGT
TTAATTGCCA CCGGTACAGC ACTGGCGATG GTCTTAGGTT TACCTCTCGG GCGCATTGTG
GGCCAGTATT TCGGTTGGCG AATGACCTTC TTCGCGATTG GTATTGGGGC GCTTATCACC
CTTTTGTGCC TGATTAAGTT ACTTCCCTTA CTGCCCAGTG AGCATTCCGG TTCACTGAAA
AGCCTCCCGC TATTGTTCCG CCGCCCGGCA TTGATGAGCA TTTATTTGTT AACTGTGGTG
GTTGTCACCG CCCATTACAC GGCATACAGC TATATCGAGC CTTTTGTGCA AAACATTGCG
GGATTCAGCG CCAACTTTGC CACGGCATTA CTGTTATTAC TCGGTGGTGC GGGCATTATT
GGCAGCGTGA TTTTCGGTAA ACTGGGTAAT CAGTATGCGT CTGCGTTGGT GAGTACGGCA
ATTGCGCTGT TGCTGGTGTG TCTGGCACTG CTGCTACCTG CGGCGAACAG TGAAATACAC
CTCGGGGTGC TGAGTATTTT CTGGGGGATC GCGATGATGA TCATCGGGCT TGGTATGCAG
GTTAAAGTGC TGGCGCTGGC ACCAGATGCT ACCGACGTCG CGATGGCGCT ATTCTCCGGC
ATATTTAATA TTGGAATCGG GGCGGGTGCG TTGGTAGGTA ATCAGGTGAG TTTGCACTGG
TCAATGTCGA TGATTGGTTA TGTGGGCGCG GTGCCTGCTT TTGCCGCGTT AATATGGTCA
ATCATTATAT TTCGCCGCTG GCCAGTGACA CTCGAAGAAC AGACGCAATA G
|
|---|
| Protein sequence | MTTNTVSRKV AWLRVVTLAV AAFIFNTTEF VPVGLLSDIA QSFHMQTAQV GIMLTIYAWV
VALMSLPFML MTSQVERRKL LICLFVVFIA SHVLSFLSWS FTVLVISRIG VAFAHAIFWS
ITASLAIRMA PAGKRAQALS LIATGTALAM VLGLPLGRIV GQYFGWRMTF FAIGIGALIT
LLCLIKLLPL LPSEHSGSLK SLPLLFRRPA LMSIYLLTVV VVTAHYTAYS YIEPFVQNIA
GFSANFATAL LLLLGGAGII GSVIFGKLGN QYASALVSTA IALLLVCLAL LLPAANSEIH
LGVLSIFWGI AMMIIGLGMQ VKVLALAPDA TDVAMALFSG IFNIGIGAGA LVGNQVSLHW
SMSMIGYVGA VPAFAALIWS IIIFRRWPVT LEEQTQ
|
|---|
| |