Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_E0052 |
Symbol | ydeO |
ID | 5585874 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009790 |
Strand | - |
Start bp | 53749 |
End bp | 54471 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 640913939 |
Product | HTH-type transcriptional regulator YdeO |
Protein accession | YP_001451589 |
Protein GI | 157149523 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAGAAGGA TAGTAGCTAT GCCCGGAGTG TGTTACTTTA TTCTCATAAA GAAACCAATA AATTTTCAGT TTCTTAAGGA TTTCCTGATA TTAAACTATG GTGATGTTCT GTTGCTTAAG CATTCAGAAA GAGATTTTTT GCAGAGCTAT TCAGATAAAT ATCTGGAAAT TGAACTTAAC GAAGATACCG TTAGAAACTA TTTATCGTAT TACAACCACT GTGAGAAACA GTTTCTGGAG ACCCCCCCCT GCATTTTAAG GAAAAGCTTT GCTTATCCAG ATTTATTAAT AAGTATGATA GATAATATAA ATTCACAAAA TCATATACAT CCAGATTTTA AGGATGCAAT ATTTTTTTCA TTGCTCTCAG TATTTAGTGA TGTAGCAAAC TTAAGAGCAT TCCTCACATC AGGAATGCCT ACGTTTTCAG GAAAAGTTCG AAGCATTTTT CTTTCAGATG TTTCTAAACA CTGGAAACTG AGAGATTTAG CTGATTATCT TTACATGAGT GAGAGCTTAA TAAAGAAGAA ACTATTATTA GAAAACACTT CTTTTAGTAA AATATTACTT GATACCAGGA TGTCGCTTGC CATTAAATTG CTAAAGCAAA ATCATCCGAT AAAATATGTG TCTGAAATGT GTGGGTTTAG TAGTACATCG TACTTTGTAT GCCTTTTCAG ACAATACTAT GAGTGTACGC CACGTAAATA TCTAAAACAT TAG
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Protein sequence | MRRIVAMPGV CYFILIKKPI NFQFLKDFLI LNYGDVLLLK HSERDFLQSY SDKYLEIELN EDTVRNYLSY YNHCEKQFLE TPPCILRKSF AYPDLLISMI DNINSQNHIH PDFKDAIFFS LLSVFSDVAN LRAFLTSGMP TFSGKVRSIF LSDVSKHWKL RDLADYLYMS ESLIKKKLLL ENTSFSKILL DTRMSLAIKL LKQNHPIKYV SEMCGFSSTS YFVCLFRQYY ECTPRKYLKH
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