| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_3540 |
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| Symbol | rocD |
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| ID | 5586935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli E24377A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009801 |
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| Strand | + |
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| Start bp | 3549239 |
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| End bp | 3550528 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640927166 |
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| Product | putrescine--2-oxoglutarate aminotransferase |
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| Protein accession | YP_001464535 |
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| Protein GI | 157158854 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4992] Ornithine/acetylornithine aminotransferase |
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| TIGRFAM ID | [TIGR03372] putrescine aminotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCAC TTAACCGAGA GGTGATTGAA TACTTCAAAG AGCATGTCAA TCCGGGGTTT
TTAGAGTATC GCAAATCTGT TACCGCCGGC GGGGATTACG GAGCCGTAGA GTGGCAAGCG
GGAGGTTTAA ATACGCTTGT CGACACCCAG GGACAGGAGT TTATCGACTG CCTGGGAGGT
TTTGGAATTT TCAACGTGGG GCACCGTAAT CCAGTTGTGG TTTCCGCCGT ACAGAATCAA
CTTGCGAAAC AACCGCTGCA CAGCCAGGAG CTGCTCGATC CGTTACGGGC GATGTTGGCG
AAAACCCTTG CTGCGCTAAC GCCCGGTAAA CTGAAATACA GCTTCTTCTG TAATAGCGGC
ACCGAGTCCG TTGAAGCAGC GCTGAAGCTG GCGAAAGCTT ACCAGTCACC GCGCGGCAAG
TTTACTTTTA TTGCCACCAG CGGCGCGTTC CACGGTAAAT CACTTGGCGC GCTGTCGGCC
ACGGCGAAAT CGACCTTCCG CAAACCGTTT ATGCCACTGC TGCCGGGCTT CCGTCATGTG
CCGTTTGGCA ATATCGAAGC CATGCGCACG GCTCTTAACG AGTGCAAAAA AACCGGTGAT
GATGTGGCTG CGGTGATCCT CGAACCGATT CAGGGTGAAG GTGGCGTAAT TCTGCCGCCG
CCGGGCTATC TCACCGCCGT ACGTAAGCTA TGCGATGAGT TCGGCGCACT GATGATCCTC
GATGAAGTAC AAACGGGCAT GGGGCGCACG GGCAAGATGT TCGCCTGCGA GCATGAGAAC
GTACAGCCGG ATATCCTCTG CCTTGCCAAA GCGCTCGGCG GCGGCGTGAT GCCGATTGGC
GCGACCATCG CCACTGAAGA GGTGTTTTCA GTTCTGTTCG ACAACCCATT CCTGCATACC
ACCACCTTTG GCGGCAACCC GCTGGCCTGT GCGGCGGCGC TGGCGACCAT CAATGTGTTG
CTGGAGCAGA ACTTACCGGC TCAGGCTGAG CAAAAAGGCG ATATGTTGCT GGACGGTTTC
CGTCAACTGG CGCGGGAATA TCCCGATCTG GTACAGGAAG CGCGTGGTAA AGGGATGTTG
ATGGCAATTG AGTTTGTTGA TAACGAAATC GGCTATAACT TTGCCAGCGA GATGTTCCGC
CAGCGCGTAC TGGTGGCCGG AACGCTCAAT AACGCCAAAA CGATCCGCAT TGAACCGCCA
CTGACACTGA CCATTGAACA GTGTGAACTG GTGATCAAAG CGGCGCGTAA GGCGCTGGCG
GCCATGCGAG TAAGTGTCGA AGAAGCGTAA
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| Protein sequence | MKALNREVIE YFKEHVNPGF LEYRKSVTAG GDYGAVEWQA GGLNTLVDTQ GQEFIDCLGG
FGIFNVGHRN PVVVSAVQNQ LAKQPLHSQE LLDPLRAMLA KTLAALTPGK LKYSFFCNSG
TESVEAALKL AKAYQSPRGK FTFIATSGAF HGKSLGALSA TAKSTFRKPF MPLLPGFRHV
PFGNIEAMRT ALNECKKTGD DVAAVILEPI QGEGGVILPP PGYLTAVRKL CDEFGALMIL
DEVQTGMGRT GKMFACEHEN VQPDILCLAK ALGGGVMPIG ATIATEEVFS VLFDNPFLHT
TTFGGNPLAC AAALATINVL LEQNLPAQAE QKGDMLLDGF RQLAREYPDL VQEARGKGML
MAIEFVDNEI GYNFASEMFR QRVLVAGTLN NAKTIRIEPP LTLTIEQCEL VIKAARKALA
AMRVSVEEA
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