Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dvul_2997 |
Symbol | |
ID | 4661922 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris DP4 |
Kingdom | Bacteria |
Replicon accession | NC_008741 |
Strand | - |
Start bp | 57173 |
End bp | 59047 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639813917 |
Product | YscC/HrcC family type III secretion outer membrane protein |
Protein accession | YP_961196 |
Protein GI | 120586851 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGTGCC TTCACGCGCC GTCACGGTGC GAGGCCGCAC CCGCCTTTCC GCACACCTAT TCGCACTATT CCGAACAGGA GCAACTGACC GCGCTGCTGG CCGACTTCGG GCGCACACAG GGCCTTGCCA CGTCGTTCTC GCCCGGTGTC ACGGGCACGG TCAGCGGCAG GTTCGAGGAC GTAGCCCCGG AGAAGTTCCT TCAGGGCATG AAGGCGGCCT TCGGCGTGTC GTGGTACCGC CTCGGCCCCA CGCTGCATTT CTACCATGAG GCCGAGACCA CGCGCATCTT CATCTCGCCG CGGGTCATGA GTGCCGAGTC GCTGTACCGC ATGTTGCGCC AGTCTTCGGT GCTGTCGCCG CAACTGCCCG CCGAACTCAT GCCCGGCGGC GCCATGGTGG TCGTCTCCGG CCCGCCCGCC TACCTCGACC AGATTCAGGC CGCGGTGACG GCCTTCGAAG AGGCCCAGAC GGGCAACTTC GGCATGAAGG TGTTCCCGCT CAAGTACGCG TGGGCCGAAG ACATCACCGT CAACAGCATG GACAAGACGG TCACCCTGCC CGGTGTCGCC AGCATCCTGC GGGCCATGGT CAGCGGGTCG CCCTCAAGCG CCACGCGCGT CACGCAAGAG ACCGCCACGG TGGACAAGCT TTCCGGCACG GGCCTCATCT CGCAGGGGCG TCAGCAGAAG GAGTCGGGCC AGTCGAATCA GGCGCAGCGC GGCGGGCAGG CCTCGCAGCA GGATTCGGGC GGGGCGCAGG ACGGTCAGCA GGTGAGCATC ATGGCCGACC CGCGCGTCAA CGCCGTCATC GTGCACGACG CCGTGTACCG GATGCCCTAC TACGAGTCGG TCATCGGCGA CCTCGACAGG CCGGTCGAAC TCGTGGAGAT ACACGCCGCC ATCGTCGACA TCGACACCAA CTTCAAGCGC GACCTCGGCG TCACCTATCA GGGTACGGTG GGCAAGGACC AGCGGTGGGC GGGCGGTGCC GACGTATCCA CGGGCACCGA CAAGTTCACC CCCCTGCCCG TACCCGGTGT ACCGCAGGGC AGCGGCCTGA CCCTCTCAAC CATCTACACC ATGGGGTCGG ACTACTTTCT CGCCCGCATC AACGCCCTCG AGAAGAACGG CGAAGCCCGG ATGCTGGGGC GGCCCTCGGT GCTGACCGTG GACAACGTGC AGGCCACCCT CGAGAACACC AGCACCTATT ATATACAGGT GCAGGGCTAT CAGGCCGTCG ACCTCTTCAA GGTCGAGGCG GGCACGGTGC TGCGCGTGAC ACCGCACATC ATCAACAACG ACGACGGCAC CGACGCCATC AAGCTGGTGG TGAGCGTGCA GGACGACCAG AACAACCAGA CCACGCCGAC CTCGACCTCC ACCACGCAGG CCATCCCGCC CATCAAGCAG ACGAAGATCA ACACGCAGGC CATCATCGGC GCGGGGCAGA GTCTGCTGAT TGGCGGCTAC TACTACGAAC AGAAGGCCAC CAGCGCCGAC GGCGTGCCCA TCCTCATGAA CATCCCGGTA CTGGGCAACC TGTTCAAGAC CCAGTCGAAA GAGAACAAGA GGATGGAACG CCTCATCCTC ATCACCCCCA AGGTGGTGCG CCTCGACAAC CTGCCGGGGA CCCCGCCACG GGTCGACGAC CCCGCCTTCC ACCGCACGGC CACCCAGTCG GACTATGCCG AACGCACCCC CACGCCGCCC CCGTCGCGCC GTAGCGGTTG CAGCCGCGCG CCCGACAATG CGCCGGAAGC GGCTTCGGGT GCGGCAGGTG GCACGGGAGG AACAGGGGTG ACAGCGAACA CAGAAGGCGG CACCACGCCC CAAGCGGCCA CATCCCCTGT CCCTGCGTAC GGAGTCGCCC CATGA
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Protein sequence | MLCLHAPSRC EAAPAFPHTY SHYSEQEQLT ALLADFGRTQ GLATSFSPGV TGTVSGRFED VAPEKFLQGM KAAFGVSWYR LGPTLHFYHE AETTRIFISP RVMSAESLYR MLRQSSVLSP QLPAELMPGG AMVVVSGPPA YLDQIQAAVT AFEEAQTGNF GMKVFPLKYA WAEDITVNSM DKTVTLPGVA SILRAMVSGS PSSATRVTQE TATVDKLSGT GLISQGRQQK ESGQSNQAQR GGQASQQDSG GAQDGQQVSI MADPRVNAVI VHDAVYRMPY YESVIGDLDR PVELVEIHAA IVDIDTNFKR DLGVTYQGTV GKDQRWAGGA DVSTGTDKFT PLPVPGVPQG SGLTLSTIYT MGSDYFLARI NALEKNGEAR MLGRPSVLTV DNVQATLENT STYYIQVQGY QAVDLFKVEA GTVLRVTPHI INNDDGTDAI KLVVSVQDDQ NNQTTPTSTS TTQAIPPIKQ TKINTQAIIG AGQSLLIGGY YYEQKATSAD GVPILMNIPV LGNLFKTQSK ENKRMERLIL ITPKVVRLDN LPGTPPRVDD PAFHRTATQS DYAERTPTPP PSRRSGCSRA PDNAPEAASG AAGGTGGTGV TANTEGGTTP QAATSPVPAY GVAP
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