| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_1341 |
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| Symbol | secD |
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| ID | 4664493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris DP4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008751 |
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| Strand | + |
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| Start bp | 1635503 |
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| End bp | 1637101 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639819571 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_966786 |
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| Protein GI | 120602386 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.087277 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.613358 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAGG GTCTCCGTTG GCGGCTGGCC CTGTCGCTGG TGGTCTTTCT GGCTGCCGTG
GCCTATGTGC TGCCGAGCAT TCCCGCCGTC AAATCTTCCC CGATGGGCAG ATTCCTGCCC
GACAACCGCA TCAGCCTCGG CCTCGACCTC ATGGGGGGCA TCCACCTCAC GCTGGGCGTC
GACGTGGACA AGGCTGTCGA GAATTCCCTT TCGCAGATGG GGCAGGACAT CCGCTCCTCG
GCCCGTGAGA AGGACATCTT CATCCTCCGT CCCCGCATTT TGCCGGGTGA CAGGGTCGAG
TTCGTTCTCG CCAAGGCTGC GCAACGCGAC CAGCTGGGCG AGATGCTCGC CAAGCAGTTC
CCGCAGCTTG CCGTGGGCGC CCCTGTCGAG ATCGACGGCG GGCAGCTGCG TTATGTGGCG
ACGCTCAAGA AAGAGCAGCG CACACATATC GAGGACATGG CCCTCGATCA GGCTGTGAAG
ACCATCCGCA ACCGCATCGA CCAGTTCGGT GTGGCTGAAC CGGATATCCG CAAGCAGCAG
GACCATCGCA TTCAGGTCCA GTTGCCCGGC CTTGCCGACC CCGCACGCGC CATTCAGATC
ATCGGCAAGA CGGCGCACCT CGAATTCCGT ATCGTCAGGG ACGACGTCGA TCCCGAGAAA
CTCGCCAAGG GCCTTGTGCC CCCCGGTGTG GACGTGCTTC CCATGATGCG CCGTGGCGGC
GACGGGTCGG CGGGCGAAGT GCCCGTGGCC CTCGACAAGG AGATTCTCCT CACCGGCGAG
AACGTGGCCG ACGCCAGACC CGGCTTCGAC CAGTTCAATC AGGCGTATGT CATGCTCACG
TTCAACAGCC GCGGTGCCGC CATCTTCGAG CGTGTGACGG GCGAGAACGT GCGCAAGCGT
CTTGCCATCG TCCTTGACGG CAAGGTCTAT TCCGCGCCTT CCATTCAGGA GAAGATAGCG
GGCGGCCGCG CCAGCATCAC CGGTCATTTC ACCACTGAAG AGGCACAGGA CCTTGCCATC
GTGCTGCGCG CAGGCTCGCT GCCCGCTCCG GTCAACGTGC TCGAAGAGCG CACGGTTGGT
CCCTCGCTCG GTCAGGAGTC CATCGACAGC GGTATTCTCG CCGGTCAGGT GGGCGGTGCT
GCCGTCGTCG TCTTCACCAT CCTCTATTAC GGGGCCAGCG GCGCCATCGC CGTCGGGATG
CTGTGCTTCA CCATCCTGCT CATCCTTGCT GGCATGGCTG GCTTCGGCGC TACGCTGACG
TTGCCGGGCC TTGCGGGTAT TGCGCTGACC ATCGGCATGG GCGTCGACGC CAACGTGCTC
ATCTACGAGC GCATCCGCGA AGAACTGCGG CGCGGTCTCA CCCCGCTGGC GGCCATTCAC
GCCGGATTCG ACAGGGCCAT GCTCTCCATC ACCGACTCGA ACCTCACCAC GGTGATTGCT
GCAGCCATCC TGTACCAGTT CGGCACCGGC CCGGTGCGCG GCTTCGCCGT GACCCTCACC
CTCGGCATCC TCGCCTCGAT GTTCACGGCC ATTTTCGTCT CGCGCGCCGT CTTCGACCTG
TGGATGCGCC TGTCGCCCTC AAAGCGGCTC AGCATCTAG
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| Protein sequence | MNEGLRWRLA LSLVVFLAAV AYVLPSIPAV KSSPMGRFLP DNRISLGLDL MGGIHLTLGV
DVDKAVENSL SQMGQDIRSS AREKDIFILR PRILPGDRVE FVLAKAAQRD QLGEMLAKQF
PQLAVGAPVE IDGGQLRYVA TLKKEQRTHI EDMALDQAVK TIRNRIDQFG VAEPDIRKQQ
DHRIQVQLPG LADPARAIQI IGKTAHLEFR IVRDDVDPEK LAKGLVPPGV DVLPMMRRGG
DGSAGEVPVA LDKEILLTGE NVADARPGFD QFNQAYVMLT FNSRGAAIFE RVTGENVRKR
LAIVLDGKVY SAPSIQEKIA GGRASITGHF TTEEAQDLAI VLRAGSLPAP VNVLEERTVG
PSLGQESIDS GILAGQVGGA AVVVFTILYY GASGAIAVGM LCFTILLILA GMAGFGATLT
LPGLAGIALT IGMGVDANVL IYERIREELR RGLTPLAAIH AGFDRAMLSI TDSNLTTVIA
AAILYQFGTG PVRGFAVTLT LGILASMFTA IFVSRAVFDL WMRLSPSKRL SI
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