| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_2355 |
|---|
| Symbol | |
|---|
| ID | 7174289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 2972568 |
|---|
| End bp | 2975126 |
|---|
| Gene Length | 2559 bp |
|---|
| Protein Length | 852 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643540885 |
|---|
| Product | (NiFe) hydrogenase maturation protein HypF |
|---|
| Protein accession | YP_002436764 |
|---|
| Protein GI | 218887443 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0068] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 67 |
|---|
| Fosmid unclonability p-value | 0.218654 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGACG ATCTCGTGCG CCGCAAGTTC ACCGTGTCCG GGCAGGTCCA GGGGGTGGGG
TTTCGCCCCT TCGTGTACCG CATCGCCGCC GACCATGCGT TGACCGGCAC GGTCAGCAAC
ACCGCCGCCG GGGTGTTCAT AGAGGTGCAG GGGCCTGCGG CGTCCGTTGA CGGCTTCGGG
CACGACCTGA CCCACAAGCT GCCGCCGCTG GCGCGGGTGG TGTCCTGCAC GCATCAGGAC
ATCCCCGTGG CGGAAGGCGA GGACGGGTTC CGCATCGTCG CCAGCGGCGA CGGGGGGGCG
GGGCACGAGG TGCTCATCAG CGCCGACGTG GCCACCTGCG ACGACTGCCT GGCCGACATG
AGCGACCCGG CCAACCGCCG CCACCTGTAC CCCTTCACCA ACTGCACCAA CTGCGGGCCG
CGCTACACCA TCACCCGGTT CATCCCCTAC GACCGCGACA AGACCTCCAT GGCCTGCTTT
CCGCTGTGCC CGGCATGCGC GGCGGAATAT GAAAACCCGC TGGACCGGCG CTTTCACGCC
CAGCCCAACG CCTGCCCGGT ATGCGGGCCG CGCGTGTGGT ACGTGGACGG CGCGCCCGAC
GGCCCGGCGG CGGACACGGG ATATGACGCC GCGCCCGGCT CCGGACGCGG AGACGAACCC
GGCTGCGCAC CCGCCTCAGA TCATGGCGCA GGCCGTCCCA CGGGCACCCC GGCCATCCAG
GCACTGGCTG AAGCGCTGGC CGCGGGACGC ATCGCCGCCG TGAAGGGGCT GGGCGGGTTC
CATCTGGCCT GCGACGCGGC CAGCGATGCC GCCGTGGGCG AACTGCGCCG CCGCAAGCAC
CGGCCCCACA AGCCGCTGGC CATCATGGTG CCGGACCTTG CCGCCGCCCG GCGCATCGTG
CACGTTTCGC CGGAAGAAGA GGCCCTGCTG GCCGGGCGCG AACGGCCCAT CGTGCTGTGC
CGGGCGCTGG ACGGGCTGGC GGGCGGCATG CACGGCGTGG CCCGGCCCGG CGACGGCAGC
CCGCTGGTCC TCGATCCCGA TGCGCCCCGC ACCCCGCCAC CCATTTCGCC CCTCATCTCG
CCCCTCATTT CGCCGGACAC GCCCTTCGTG GGGGTGATGC TGCCCTACAC GCCCCTGCAC
CACGTGCTGC TGCGCCTGTA CGGCGCGCTG CTGCCGGAAG ACCGCGTACC CGCGCTGGTG
ATGACATCCG GCAACGCGGG GGGCGAGCCC ATCTGCCTCG GCAACCGCGA GGCGCTGCGC
CGCCTGTCGT CCATTGCCGA CGTGTTCCTG CTGCATGACC GCGACATCCT GATCCGCACC
GACGACTCGG TGACGCGGGT CAACCCGGCC ACCGGCGCGC CGCAGTTCCT GCGCCGGGCG
CGCGGCTTCA CCCCCCGGCC CGTGTTCCTG GAGGGCGACG GCCCGTGCGT GCTGGCCATG
GGGCCGGAGC TCAAGAACAC CCTGTGCGTC ACCCGGGGCG ACAAGGCCTT TGTCAGCCAG
CACATCGGCG ACATGCACAA CCTGGAAACC CTGGGCTTTC ACCGCGAAAT CGCCGCGCAC
CTGCCGCGCA TCCTGCAAGT GACGCCGCAG GCCGTGGTGC GCGACCTGCA CCCCGACTAC
ATGACCACGG CGGAAGCCGA ACAGAGCGGC CTGCCCGTGC TGACCCTGCA ACACCACTTC
GCGCACATCC ACGCCGTGCT GGCCGAAAAC CGGCACGACG GCCCGGCCCT GGGGCTGGCC
CTTGACGGCA CCGGCCACGG CGACGACGGC ACGGTGTGGG GGGGCGAACT GCTGTACGTG
GACAACGTGG CGCTGGACCA CCAGCGGCTG GGGCGGCTGG CCCGCATCCC CCTCCCGGGG
GGCGAGGCCG CCATCCGCGA GCCGTGGCGC ATCGCGCAGG GGTTGCTGTG GCACCTGGGC
CTGCACGAAC CTGTTACGGA CGGCGCGCGT CCGTGGCCGT GGCTGCGCGA CCACGCCCAG
GCCGCAGCCC TGCTGCCGCG CCTGCTGGAA CGCGGGGTGA ACACCCCGCT CACCTCCAGT
TGCGGACGGC TGTTCGACGC CGTGTCCGCC CTGCTGGGGC TGTGCACCAC CGTCACCTAC
GAAGGGCAGG CGGCCATCCG GCTGGAACAC GCGCAGGACG CCGTATCACC ATGCGGCGGC
AGCCACGACG CCTTCTTCAC CCACGCCTAC CCCTGCCCCC TGCGCGGAGC GCGTGACGGC
AGCGACACGC TGGTGCTGGA CACGCACGCG CTGTTCCGCG CCGTGCACGA CGACTGGGCG
CGCGGCACCC CGCCCGGAGA GGTAGCGCGC CGCTTCCATG CCGGGGTGGT GGCGGGCCTT
GCCGACATGG CCGCCGCCGT GGCCGGGGTG ATGGACGTGC CCGTGGTGGC CCTGTCCGGC
GGGGCCATGC AGAACCTCAC CCTGTCCGTG CACCTGCCGC AGGCCCTTGC CGCGCGCGGG
CTGACCGTGC TGACCCACGC GGAACTGCCC CCCGGCGACG GCTGCATCTC GCTGGGACAG
GCCGCCTGGG CGCGCCGGGA ACTGGCCGGG CGGGGGTAA
|
|---|
| Protein sequence | MPDDLVRRKF TVSGQVQGVG FRPFVYRIAA DHALTGTVSN TAAGVFIEVQ GPAASVDGFG
HDLTHKLPPL ARVVSCTHQD IPVAEGEDGF RIVASGDGGA GHEVLISADV ATCDDCLADM
SDPANRRHLY PFTNCTNCGP RYTITRFIPY DRDKTSMACF PLCPACAAEY ENPLDRRFHA
QPNACPVCGP RVWYVDGAPD GPAADTGYDA APGSGRGDEP GCAPASDHGA GRPTGTPAIQ
ALAEALAAGR IAAVKGLGGF HLACDAASDA AVGELRRRKH RPHKPLAIMV PDLAAARRIV
HVSPEEEALL AGRERPIVLC RALDGLAGGM HGVARPGDGS PLVLDPDAPR TPPPISPLIS
PLISPDTPFV GVMLPYTPLH HVLLRLYGAL LPEDRVPALV MTSGNAGGEP ICLGNREALR
RLSSIADVFL LHDRDILIRT DDSVTRVNPA TGAPQFLRRA RGFTPRPVFL EGDGPCVLAM
GPELKNTLCV TRGDKAFVSQ HIGDMHNLET LGFHREIAAH LPRILQVTPQ AVVRDLHPDY
MTTAEAEQSG LPVLTLQHHF AHIHAVLAEN RHDGPALGLA LDGTGHGDDG TVWGGELLYV
DNVALDHQRL GRLARIPLPG GEAAIREPWR IAQGLLWHLG LHEPVTDGAR PWPWLRDHAQ
AAALLPRLLE RGVNTPLTSS CGRLFDAVSA LLGLCTTVTY EGQAAIRLEH AQDAVSPCGG
SHDAFFTHAY PCPLRGARDG SDTLVLDTHA LFRAVHDDWA RGTPPGEVAR RFHAGVVAGL
ADMAAAVAGV MDVPVVALSG GAMQNLTLSV HLPQALAARG LTVLTHAELP PGDGCISLGQ
AAWARRELAG RG
|
|---|
| |