| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1943 |
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| Symbol | |
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| ID | 7173861 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 2398885 |
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| End bp | 2401092 |
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| Gene Length | 2208 bp |
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| Protein Length | 735 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 643540459 |
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| Product | ribonuclease II |
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| Protein accession | YP_002436354 |
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| Protein GI | 218887033 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 103 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGCAC CATCCGGCAT CGTGCGCTAC CCCGGCCCGG GGTGCATCGT TGAATTCATG
CAGGGCAACC GCCCCATAAC GGCCTGGGTG CTCGAAGAAC AGGCAGGCAA GCTGCGCCTG
CTGCTCGCCA ACCGCCGCGA AACCAAGCTC ACCACCAACC GCCTGCTGCC CTGGTCCGGC
CCGGTCTACT CCGGCGAATA CGGCCGCCAG CAGATCATCG ACCTGCTGGA ACTGCACCGC
CAGCGCCGCG ACGACCGCGA AACCACGCTC GACGCGCTGG AACTCTGGAC CCTGGCCCAG
GGCGAAGTGG ACCGCGCCTC GCTGGAATGG TTCGCGGAAC TGCTCTGGGA AGCGCCCGAA
GTGGACGACC TTGCCGCCCT TGGCCGCGCC ATGCTGGCCT GCAAGACCCA CTTCAAGTTC
CAGCCGCCCG ACTTCGAGGT GTACACCGCC GAAAAGGTGG ACGCCCGTCT GGCCGAACAG
GAAGCCACCC GCCAGCGCGA AGCCCTGGTG GCCGCAGGCA ACGAATTCGT GCGCATCCTG
TGGGACGTGC ACTCGCGCCG CCGCACCCTG CCGCCGGAAA CCTCGCCGGA ACGGCCCGCC
CCGGACATCG CCGAACAGCT GGCCGCGCTG GTCATGACCC GCTTGGCCGA CCCGGACGAC
CACGACTCCG AGGCGGTCTG GAAACAGGTG ACCAAGGGCC TGCCCGACGA CCCGCACCTG
GCCCTGCACC TGGCCAAAAC CTGGGGCCTG GTGCCGGAGC ACCACAATTT CTGGATGGAC
CGCGCGGGCT ACGACCCCGG CAACGCCTGG GCAGCCGGCC ACGCGGACGA CATCGCCGCG
CTGCGCGCCG CCGTGGAATC CGCCCGGCGC GAACCGCTGG GCACGCCGTT CATCTCCATA
GATTCCGCCA CCACCCGCGA CATCGACGAC GCCTTCCACA TCGAGGCGCG CGGCGACGGG
GGCTTTCGCC TGTGGCTGGC CCTGGCCTGC CCGGCCCTGG CCTGGCCCTA CGGCAGCGAA
CTGGACAAGG CCGTGCTGCG CCGCGCCACC AGCATCTACC TGCCGGAAGC CACCCACCAC
ATGCTGCCCG AGGAACTGGG CACAGGCTTC TTCAGCCTGC TGGCCGGGCA GGACCGGCCC
GCGCTGGTGC TGGCCATGGA AGTGGCCCCG GACGGAGAAC TGCAATCCTG CGTGCCCGGC
GGGGCGTGGG TGAACCTGGC CGCCAACCTC ACCTACGAGG CCTGCGAGGC CTGTCTGGCC
GCCGTGGCCC CGCCGCAGGC CGCCCCGAAC CCGGACGACG ACCTGCTGGC GGCCATGCTG
GCGGGCGCCC CGGACGCGGA GGACGCCGCA TCCGCCCCCA CCGCCGCGCC CATCCCCCTG
CCGGACAACG CGGCGGCCCC GCACGCGGAC CGGCTGGCCG TGGCCGACAG ACTGGCGCGC
GCCCTGCAAT CCCACCGCAT CGGGCGCGGG GCGGTGATCA TCGAACGCGA CGATCCGAAG
GTGACGTTAT CCGGCGAAGG CTCCGCCACC GTGGTGGACA TTGCGGAGCA GCCGACCACG
CCGCGCAGCC AGTCCATCGT GGCGGAGATG ATGATCCTCG CCAACGCCGG GGTGGCCCGC
TGGGCCGGCG AGAACCGCGT GGCCCTGCTG CACCGCACCC AGGACGTGGG CATTCCCCGC
GAATACGCCG GGGTGTGGCG CGCCCCGCAC GAGGTGGCGC GGGTGGTCAA GGCCCTGGCC
TCGTCGCTGC TGGAAACCTC GCCCCGGCCC CATGCGGGCA TCGGGGTGCC CGCGTACAGC
CCGGTCACCT CGCCGCTGCG CCGCTACCCC GACCTGATCA ACGAAACCCA GGTGCTGCAC
GCGCTGGCCA CCGGGCAGGG CCGCTGGACC CGAGAGGAAC TGGACGCCAT GCTGCCCCTG
CTGAACGCCC GGCTGGACGC GGCGGGACAG GTGCAGCGCT TTCGCCCGCG CTACTGGAAG
CTGCTGCATT TTCGCCAGAA GGGCGACAAG ACCTGGTGGC ACGCCGTGGT CACGGAAGAA
AACGACGCCT TCGTCACGGT CAGCCTGCCG CGCGAACAGC TGTTCCTGCG CGGGCGGCGC
GCCACATTCG GCGACAAGGT GAACCCCGGC CAGCACTTCC GGGTGCGGGT GGGCAAGATC
CATCCGCTGA ACAACGAAAT CCAGATACTG GACGCGGAAG AAGAGTGA
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| Protein sequence | MAAPSGIVRY PGPGCIVEFM QGNRPITAWV LEEQAGKLRL LLANRRETKL TTNRLLPWSG
PVYSGEYGRQ QIIDLLELHR QRRDDRETTL DALELWTLAQ GEVDRASLEW FAELLWEAPE
VDDLAALGRA MLACKTHFKF QPPDFEVYTA EKVDARLAEQ EATRQREALV AAGNEFVRIL
WDVHSRRRTL PPETSPERPA PDIAEQLAAL VMTRLADPDD HDSEAVWKQV TKGLPDDPHL
ALHLAKTWGL VPEHHNFWMD RAGYDPGNAW AAGHADDIAA LRAAVESARR EPLGTPFISI
DSATTRDIDD AFHIEARGDG GFRLWLALAC PALAWPYGSE LDKAVLRRAT SIYLPEATHH
MLPEELGTGF FSLLAGQDRP ALVLAMEVAP DGELQSCVPG GAWVNLAANL TYEACEACLA
AVAPPQAAPN PDDDLLAAML AGAPDAEDAA SAPTAAPIPL PDNAAAPHAD RLAVADRLAR
ALQSHRIGRG AVIIERDDPK VTLSGEGSAT VVDIAEQPTT PRSQSIVAEM MILANAGVAR
WAGENRVALL HRTQDVGIPR EYAGVWRAPH EVARVVKALA SSLLETSPRP HAGIGVPAYS
PVTSPLRRYP DLINETQVLH ALATGQGRWT REELDAMLPL LNARLDAAGQ VQRFRPRYWK
LLHFRQKGDK TWWHAVVTEE NDAFVTVSLP REQLFLRGRR ATFGDKVNPG QHFRVRVGKI
HPLNNEIQIL DAEEE
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