| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1399 |
|---|
| Symbol | |
|---|
| ID | 7173303 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | + |
|---|
| Start bp | 1707374 |
|---|
| End bp | 1710295 |
|---|
| Gene Length | 2922 bp |
|---|
| Protein Length | 973 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643539906 |
|---|
| Product | Ribosomal small subunit Rsm22 |
|---|
| Protein accession | YP_002435815 |
|---|
| Protein GI | 218886494 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG5459] Predicted rRNA methylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 84 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCATC TTTTCGCCGC CCTGTCCCCG GAATACCGGC AGCGCCTGGA ATCACTGCCC
ACGGCGCTGG ACACCGTGGC CCCGCTACGC ACCGCGCACC GCCGCGACCT GCCCACGGCC
ATCCACGACC TGTCGCTGGT GCTCACCAGC GAGCGCGGTT CGCTCTCCGA CCCGTACTGG
GCGGCCCCGC GCCTGCTGTC CGCCTACCTG CGATACTTCA TGCCGTGGAA CCTGGTGCGC
CTTGGCCGCC TGCTGCCCTC GCTGGACCTG GTGGACCGCG ATGCCCTGCT GGAACGCCCG
CTGATCCTGG ACCTGGGCAG CGGCCCGCTG ACCCTGCCCC TGGCCCTGTG GCTGGCCCGG
CCCGACCTGC GCACCCTGCC GCTGACCTTC CTGTGCGCCG ACATCGCTCC TCACCCGCTG
GAAGTGGGCC GCGAACTGCT GCAAGTCATC GCGGGAGAAG AATCGCCCTG GGCGCTGCGC
ACCCTCCGCG CCCCCATGGA ATCGGCCCTG AAGGAGGCGC GCGGTGACGC GGCGCTGATC
ATGGCGGGCA ACGTGCTGAA CGAACTGAAA CCGCGCCGCG ACGAACCGCT GGAATTCCGT
ATGGAGGACT TGGCCGAAAA GATCGGCTCG GCGCTGTCAC ACGGCGGTCG CGTCCTGGTC
ATCGAGCCGG GTACCCGCCT GGGTGCGCGC TACGTCACCC TTTTCCGCCG CGCGGCCATG
GAGGTGGGGC TTGCCCCGCT GTCCCCCTGC CCCCACCACG ACGAATGCCC CCTACTGGAA
CAGGGCGGCG CGGGCGGCTG GTGCCACTTC ACCTTCCCCA TCCAGGGCGC GCCCACGTGG
CTGGAAGAAC TGAGCCGCCG GGCCAAGCTG GAAAAGGGCA CCGCCAGCCT GTCCTTCGTG
CTGCTGGGCG AGGCGGACAA GGTGGTGGCG CCGCACAACA CCATCCGCAT CATTTCCGAC
GCCTTCCCCC TGCCCGGACG TCGCGAACCC GCGCGCTACG CCTGCTCCGA ACGGGGGCTG
GCCCTGCTGC ACGACGCGCG GCACGTGCAT TCCGGCACGG CCATCGACAT CACCTGGCCG
GAAGTGGAAC GCCGCGACCG CAAGTCGGGC GCGCTGGAAC TGGAATGGAC CCCGCCCAGC
CGGGATGGCA AGGCCATTGG CCCTACGGGT ACTGCGGGCG CTGCGGGCAA GGCCCCCAGA
GGCAAGGCAA GCCCGGTCGA CCGGGATGGA AAGCCAGTAC GCGGCAAGGC TGCCGGGCGC
GCGGCGCAAG CAGCCCCCGG GATGGACGAC GGGGACGACA CGCAGCCAGC CTTCCTGATG
GAAGGCGCGC CGCAACGGGA TGCGCCCGCT GCCGCCGGAG CCGGAACCGG AGGTGAAGAT
TTCGACGGGC CCCATGAACA TGAAGGACAC GATCCGTCCG AACCCAACGG CAACCGAGCA
GATGGCCCCG ACCACGGCGC GACGTACAGC CAGATGTTCG CCAACCAGCC ACACGGGGGC
AGGGCCGCGC AGCGGCGCGG CATGCCGCGC TTCGGCGCGC GGCGTGGCCG CACCCTTGAC
GACGGGTTCG GTGAACCGTT CAGCGGCGGC CTTGCGGGCG ACGGCGGCGC GGGCCATGGC
GGCCGCCGCC GGGACGGCCT GCCCGATGAT TTCGGCAACC GCGCGGAATC GGGTGGACGC
CGGACCAATC GCACGGAGCG CGACGGTGGC TCCGGCATGC GCAAGGCCGG GCGGGGTGCC
GGGCAGCCCG ACGGTCAGCG TGCTGACCGG AGAGAGCGTC ACCCCGACGG GCAGCGCGCT
GACCGGAGGG AACGTCACCC TGACGGGCAG CAGGGCAACC AGCGCGGCCA GTGGGCCAAC
CGCCGCCCCC GGCATGGCGA ACATGGCGCA CAGGACGAAC AGGCCAATGC CCGACAGGAC
CGGAACGCCC CCAACGCCAC GGCCCAGCGC GCCCTGAACG CGTGGGACGA CGCTGGCAAT
GGGACGCAGT CCGCTCGGCA GGGACAGCAT CAGGGCCGGG GACAACGGCC CGCACATGGC
GACCGTGACG GCCAGCAGCG CACGCAGGGT CGCCCGCAGC GCCCCTTCGG CAATGCCCGC
CGCCAGCGGC CCGACGGTCC GCAGGAAGGA CGGCGCGAAG GCCGGGGCGA CCATGACCGG
CAGCCGCGCG CCCAGCGGCA GGACGGCAAT CAGGGGCGCG GACAGGAACG TCGGCCAGAT
CAAATGGACC GGATGGAGCG AGGGGACCGG CATGAGCGGG GCGGCGAACG CCACGAACAC
CGCGCCCAGC GCCACCCCGG AGCCCGAAGC GACGCCCCGC GCGACCGCAG GCCGGACCAC
CGGCAGGAGC GCGCCGCCGG TGCCCGTCCG GACGCCCGTC CGGACGACCG GCCCGATACC
AGGCTCGAAT CGCCGCGCGA TTTCGGGGGC CAGCAACGCA CCGACGAAGG CCGCAAGGGC
AAGCCGCGCC GCCACTTCGA CCGGGAAGGC AGGCCCGGCG CCCAGCAGGA CCGTGATGGC
CGTGCCCCGC GCCGCGCCGA GGAACGTCGG CCCGAGGAGC GTCGGCCCGA GGAACGTCGG
CCAGCCGAGC GCGGCCCGGC AGACCGTCGG CCCGAAGGGC GTGGCCCCGC ACCCCGGCGC
GATGACGGGC AGCAGCGTCC GCAGCAGGGT CGTCCTGATC GCGGTGGACG TGGTGAGCGC
AGCCAAGACC AGCGCAACGC CCCCCGCAAC GATCGTCGCC CCGGCGAACA GTCCGGGCAG
CGTACCGATC GCCGCCCGGA GCGCTCCGAA CAGCGCCAGA GCGAGCGCCA GAGCGAGCGC
CCGAACGAGC GGCGGGATGA CCGTCGTGAC GACCGCCGGG ATGATCGGCC CGAAAACGGC
CAGCATCAGG CGCGGCGGCG CAGGCCCCGG CGCGACGACT AG
|
|---|
| Protein sequence | MHHLFAALSP EYRQRLESLP TALDTVAPLR TAHRRDLPTA IHDLSLVLTS ERGSLSDPYW
AAPRLLSAYL RYFMPWNLVR LGRLLPSLDL VDRDALLERP LILDLGSGPL TLPLALWLAR
PDLRTLPLTF LCADIAPHPL EVGRELLQVI AGEESPWALR TLRAPMESAL KEARGDAALI
MAGNVLNELK PRRDEPLEFR MEDLAEKIGS ALSHGGRVLV IEPGTRLGAR YVTLFRRAAM
EVGLAPLSPC PHHDECPLLE QGGAGGWCHF TFPIQGAPTW LEELSRRAKL EKGTASLSFV
LLGEADKVVA PHNTIRIISD AFPLPGRREP ARYACSERGL ALLHDARHVH SGTAIDITWP
EVERRDRKSG ALELEWTPPS RDGKAIGPTG TAGAAGKAPR GKASPVDRDG KPVRGKAAGR
AAQAAPGMDD GDDTQPAFLM EGAPQRDAPA AAGAGTGGED FDGPHEHEGH DPSEPNGNRA
DGPDHGATYS QMFANQPHGG RAAQRRGMPR FGARRGRTLD DGFGEPFSGG LAGDGGAGHG
GRRRDGLPDD FGNRAESGGR RTNRTERDGG SGMRKAGRGA GQPDGQRADR RERHPDGQRA
DRRERHPDGQ QGNQRGQWAN RRPRHGEHGA QDEQANARQD RNAPNATAQR ALNAWDDAGN
GTQSARQGQH QGRGQRPAHG DRDGQQRTQG RPQRPFGNAR RQRPDGPQEG RREGRGDHDR
QPRAQRQDGN QGRGQERRPD QMDRMERGDR HERGGERHEH RAQRHPGARS DAPRDRRPDH
RQERAAGARP DARPDDRPDT RLESPRDFGG QQRTDEGRKG KPRRHFDREG RPGAQQDRDG
RAPRRAEERR PEERRPEERR PAERGPADRR PEGRGPAPRR DDGQQRPQQG RPDRGGRGER
SQDQRNAPRN DRRPGEQSGQ RTDRRPERSE QRQSERQSER PNERRDDRRD DRRDDRPENG
QHQARRRRPR RDD
|
|---|
| |