| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0886 |
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| Symbol | trmE |
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| ID | 7172775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | - |
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| Start bp | 1069223 |
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| End bp | 1070659 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 643539386 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_002435309 |
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| Protein GI | 218885988 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 0.00940326 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGGCAGG AAGGCACCAT CGCCGCCATC GCCACCCCGC CCGGCCACGG GGGGGTGGGC
ATCATCCGCA TCAGCGGGCC GGACAGCCAT GCCATTCTGG GGCGGCTGTT CCTGCCCGCT
TCGCCGCGTT TTGCCGGGTT CCGGCCCTGG ACGCTGCACC GGGGCCGCGC GTGCGATGCC
ATGGGCGCGC CGCTGGACGA CGTGCTGGCC GTGGCCATGC CCGGCCCGCG CACCTTTACC
GGCGAGGATG TGGCCGAAAT CCACTGTCAC GGCGGTCCTG CCGTGCTGGC GGCGGTGCTG
GAGGCGGCCT GCGCCTGCGG CGCACGGCTT GCCGGACGGG GCGAATTCAC CCGGCGGGCC
TTTCTGAACG GACGCATGGA CCTGACCCAG GCCGAAGCCG TGGCCGAGAT GATCGCCGCG
CCCGCACAGG GCGGGCTGCG CCTGGCCCAG GCCCGGTTGC AGGGGCTGCT GGGCACGCGG
GTGGCGGAAC TGCGGGCGCG CCTGCTGGAT CTGCGCGCGC AGTTGTGCGT GGCCGTGGAC
TTTCCGGAGG ACGAGGTGGA CTGCCTTGCC CCCGAGGCCT TCGTGGCCGA ATGCGATGCC
GTTGCCGCCG GGGTGCGCGG GCTGTTGTCC GCGCACGAGC GGGGCCGCTG CTGGCAGGAG
GGCGCGCTGG TGGTGCTGGC CGGGCACGTC AATGCGGGCA AGTCCAGCCT GATGAACGCC
CTGCTGGGCC GCCGCCGGGC CATCGTCACC GACATGCCCG GCACCACGCG CGATTTCATC
GAGGAGCCGG TGCAACTGGC CGGGCTGCCG GTGCGCCTGG TCGACACGGC GGGCCTGCGC
GACACCGGCG ACATCGTGGA ACAGGAGGGC GTGCGCATCA GCCGCGACCT GGTGGCCCAG
GCCGACCTGG TCCTGCTGGT GGTGGACGCC GCCGCCGGGC TGGGCCATGC CGAGCGCGAA
CTGCTGCGCC ACGTGCGCGA CCAGCATGCC CAGGTGGGCA GGCCGGGCAG GCCGGGCGGG
CGGGTGCTGG TGGTGCTGAA CAAGACCGAT CTTGCCGCCG AGGCCAGTGC CGCCTTCCGG
TGCCCGACCG AGGTGGAGGG CTGCCCCTGC GTGGCCGTTT CCGCCTTGCG CGGGCTGGGC
GTGGACGAAC TGGCCGCCGC CGCGCGGGCC ATGGTACTGG CGGGGCTTGG CGGGGACGAT
GCCGGCGGCG AGCCGGAATC CGGCGATCTT GCCCCCAACC TGCGCCAGGC CCAGGTGCTG
CGCCGTGCGC TGGACGAACT GGACGCCCTG GTGGCGGATG TCCGCGCCGG GGTGCCCTAC
GACCTGTGTT CGGTGCGGCT GGACGGCGCC TGCGCCGTGC TCTCCGAAAT CACCGGAGAG
ACCACCCCAG CAGAGGTGCT GGAGCATATT TTTTCTTCGT TCTGCATCGG GAAATAG
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| Protein sequence | MRQEGTIAAI ATPPGHGGVG IIRISGPDSH AILGRLFLPA SPRFAGFRPW TLHRGRACDA
MGAPLDDVLA VAMPGPRTFT GEDVAEIHCH GGPAVLAAVL EAACACGARL AGRGEFTRRA
FLNGRMDLTQ AEAVAEMIAA PAQGGLRLAQ ARLQGLLGTR VAELRARLLD LRAQLCVAVD
FPEDEVDCLA PEAFVAECDA VAAGVRGLLS AHERGRCWQE GALVVLAGHV NAGKSSLMNA
LLGRRRAIVT DMPGTTRDFI EEPVQLAGLP VRLVDTAGLR DTGDIVEQEG VRISRDLVAQ
ADLVLLVVDA AAGLGHAERE LLRHVRDQHA QVGRPGRPGG RVLVVLNKTD LAAEASAAFR
CPTEVEGCPC VAVSALRGLG VDELAAAARA MVLAGLGGDD AGGEPESGDL APNLRQAQVL
RRALDELDAL VADVRAGVPY DLCSVRLDGA CAVLSEITGE TTPAEVLEHI FSSFCIGK
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