| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0246 |
|---|
| Symbol | |
|---|
| ID | 7172126 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 278706 |
|---|
| End bp | 280343 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643538741 |
|---|
| Product | protein of unknown function DUF1078 domain protein |
|---|
| Protein accession | YP_002434671 |
|---|
| Protein GI | 218885350 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1749] Flagellar hook protein FlgE |
|---|
| TIGRFAM ID | [TIGR03506] fagellar hook-basal body proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 0.0426476 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTCA CGGCAAGTAT GTGGACCGGC GTTTCGGGAC TGCTGGCCCA CGGCGAGAAG
ATGAACGTTC TCGGCAACAA CATCGCCAAC GTCAACACTG TGGGCTTCAA GGGCTCGCGC
ATGGACTTCC AGGATTTCAT CAACCAGGAC GTCTACAGCG CGGTCGGGGT GAGCCAGGTT
GGCCGGGGCG TGTCCATCGG CGCCATTTTC GGCGACTTCA GCCAGGGCGC CTTTGAAACC
ACCAACGAGG CCACGGACCT TGCCATCGGC GGCAAGGGCT TCTTCCAGGT GCGGCCCAAG
GGGCAGGAAA CCTCGTACTA CACCCGCGCG GGCAACTTCC GCTTCGACAA CGACGGCTAC
CTGGTCGATC CGCACGGCTA CGTGCTGCAA GGCTGGGAAA TCGAAAAGGC CCGCCCCTCG
CTGTCCACCT CCACCGCCCA GGTGACCACC ACCACCTCGC AGATCAAGGG GGCCGGGTCG
CCCAAGGACA TCAAGCTCGA CGGCTTCACG GCCGAACCGC AGCACACGTC CACCATCACC
TCGGCCCACA ACCTCGACGC GCGCGACGGC GGCGACAAGT CGGTCAACGG CGCCAACCCG
TTCTTCTCGG TGTTCAACAA CTGGGACGGC TCGGCCGCCA CGCCGCTGTC CGACAGCCGC
TTTGCCTACC AGACCACCAT CAAGGTCTAC GACGAAGGCG GCACCTCGCA CGAACTGACC
GTCTACTTCG ATCAGGTGTC CACCGATTCC GTGGCCAACG CAGCCAGCGG CAAGCGCTAC
TGGGAATACA TGGTCACCAT GAATCCCTCG GACGACCTGC GCTCGGTCAA CGGCCTGGAC
TTCGCGGGCA CTTCGGCGGC GGGCATCCTG ATGACCGGCA CGCTGACCTT CGACACCTCC
GGCCAGCTCA CGGACATGAC CGCCTTCACC ATTGCCAGCG GCGCCACCGG CAACCTGAAG
GACATGAACA ACTGGGTGCC CACCACCTTC TCCAACAACG GCTACCCGCT GTTCGTGGCC
AACTTCTCGG GCGTTGCCAA CGCCAGCTAC ACCTCGCCCA CGGTGCCCAC CGAGGCCGAG
CCGTACCTGA TGGAGCTGAA CTTCGGCCTG CGCAACCTCA GCAACTCCTG GGGCAGCGCC
CCTGCCAGCG CCGCCGCCAT CGGCAGCAAC GCCGGCAACC TTGGCGGGCT GGGCGCGCAG
GGCGAACGGC AATCCACGGC CATGACCAGC TACGGCGGGT CATCGTCCAT GATCTTCCAG
AAGCAGGACG GCTACACCTT CGGCTTCCTG CAGAACATCA CCGTGGACCA GGACGGCGTG
GTGCATGGCC GCTACTCCAA CGGGGTCATC CTGGACCTGT ACCAGATCAC CCTGTACGAC
TTCACCAGCC CCACCAACCT GCGGCGCGAA GGGGGCAACC TGTTCTCCGA AACGCGCGCT
TCGGGCGATG CGCTGGCGGG GCCGGCCAAC GCCAACGGGT ACGGTTCCGT CAACTCCAAC
TCGCTGGAAC AATCCAACGT GGACCTTGCC CGCGAGTTCG TGCAGATGAT CACCACCCAG
CGCGGCTTCC AGTCCAACAG CAAGGTCATC ACCACCACGG ACACCATGCT TGAAACCGTC
GTGAACATGA AGCGTTAG
|
|---|
| Protein sequence | MSVTASMWTG VSGLLAHGEK MNVLGNNIAN VNTVGFKGSR MDFQDFINQD VYSAVGVSQV
GRGVSIGAIF GDFSQGAFET TNEATDLAIG GKGFFQVRPK GQETSYYTRA GNFRFDNDGY
LVDPHGYVLQ GWEIEKARPS LSTSTAQVTT TTSQIKGAGS PKDIKLDGFT AEPQHTSTIT
SAHNLDARDG GDKSVNGANP FFSVFNNWDG SAATPLSDSR FAYQTTIKVY DEGGTSHELT
VYFDQVSTDS VANAASGKRY WEYMVTMNPS DDLRSVNGLD FAGTSAAGIL MTGTLTFDTS
GQLTDMTAFT IASGATGNLK DMNNWVPTTF SNNGYPLFVA NFSGVANASY TSPTVPTEAE
PYLMELNFGL RNLSNSWGSA PASAAAIGSN AGNLGGLGAQ GERQSTAMTS YGGSSSMIFQ
KQDGYTFGFL QNITVDQDGV VHGRYSNGVI LDLYQITLYD FTSPTNLRRE GGNLFSETRA
SGDALAGPAN ANGYGSVNSN SLEQSNVDLA REFVQMITTQ RGFQSNSKVI TTTDTMLETV
VNMKR
|
|---|
| |