Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dtox_3938 |
Symbol | |
ID | 8430953 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfotomaculum acetoxidans DSM 771 |
Kingdom | Bacteria |
Replicon accession | NC_013216 |
Strand | - |
Start bp | 4113068 |
End bp | 4114486 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 645036156 |
Product | RNA polymerase, sigma 54 subunit, RpoN |
Protein accession | YP_003193254 |
Protein GI | 258517032 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000403843 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.477567 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCATGG GTTATGGCTT GCATGTTGAG CAGACACAGA AATTAATCAT GACCCCGGAA TTGCGCCAGG CCATTACCGT TTTACAGTTG TCTTCCCTTG AGTTGAGCAT GTATATAGAC CAGCAGTTGC AGGAAAACCC TATGCTGGAG GTTCGAGAAG ATGATTTAGA CCGGATTGAG GAAAATGAGG GAGCAGAAGG CGACGCTAGC GGGGGGGAAG AGGAATTATC CCGGCAGGAA TGTGATGTGG ACTGGGAAGA ATATTTTCAC GACAGTGACT TGGATTTGGG CCGCAGGGAA AAATTAGCGG AGCAGTCCGG GAGCGGCTAT GAAAATTTTT TAACGCAGGC TCCAAATCTA ACTGAATATT TGATGATGCA GTTAAATTTG AGCCGGTGCG GGGATTATTT AAAAGCTATC GGTGAGTATA TTATAGGTAA TGTTGACCAC AACGGCTACC TGCACGTGTC AGTGAAGGAG ATTGCCGAGC AATTAGAGGT AAGCCAGTCT AAGGTGGAGC AGGCTTTATC TGTTATTCAA TCCTTTGATC CGCTTGGTGT CGGCGCTTCG TCTTTGCAGG AATGTTTGCT TATTCAGGTG CGGTATTTGA ATATAAAAAA TAAGCTGGTT GCGGAACTGA TTGAAAAATA CTTGCCGGAT ATTGCTAAAG GCAGGCTTAA CCAGATAGCT CAGCAGTTAG GAGTTGCAGT GACGGAGGTG CAGGAGGCAG CAGATATTAT TAAGACGCTG GATCCCAAGC CCGGGCGCAA TTTTAGCGCT ACGAACGATG TTCGCTATAT TGTTCCGGAT GTGATAGTAG AGAGAGTCGA AGGAGAATAT ATTATTCTGG TTAACGATTC ATCGGTGCCT CGCCTGACTA TAAATACTGC ATATCGCTCT GTTTTAACAC AGGATAAGTT TGATCTTCAG ACTCGCCGTT TTGTAGAAAG TAAACTCAAT TCCGCTGCCT GGTTGTTGAA AAGTATTGAG CAGAGGCGCC TGACTTTATA TAAAGTAGCC AGTTGCTTAG TTGATTTGCA GAAGGATTTT ATGGAATACG GTGTCAAGCA TTTGAAACCG CTTAATTTAA AAACTGTAGC GGAAATAGTT GGCTTGCATG AATCGACTGT GAGCAGGGCC ACCTCCAATA AGTACATTCA AACCCCGCAA GGCGTGTTTG AGATGAAATT TTTCTTTTCT ACCGGCCTGA CTTCCGCCGG TGGAGGAATG ACTTCGGCTG AGAGTATTAA GAAGACACTC AGAGAATTGA TTGCGTCTGA AGATGCCAGA AAACCGCTTA ATGATCAGAA GATCTCGGAT ATTTTTGCCG AGCGAGGGAT AAAGATTTCT CGCAGGACGG TGGCTAAATA CAGGGATGAA CTGAATATTC CTCCTTTGAA GCAGAGAAAA CGCTATTAA
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Protein sequence | MRMGYGLHVE QTQKLIMTPE LRQAITVLQL SSLELSMYID QQLQENPMLE VREDDLDRIE ENEGAEGDAS GGEEELSRQE CDVDWEEYFH DSDLDLGRRE KLAEQSGSGY ENFLTQAPNL TEYLMMQLNL SRCGDYLKAI GEYIIGNVDH NGYLHVSVKE IAEQLEVSQS KVEQALSVIQ SFDPLGVGAS SLQECLLIQV RYLNIKNKLV AELIEKYLPD IAKGRLNQIA QQLGVAVTEV QEAADIIKTL DPKPGRNFSA TNDVRYIVPD VIVERVEGEY IILVNDSSVP RLTINTAYRS VLTQDKFDLQ TRRFVESKLN SAAWLLKSIE QRRLTLYKVA SCLVDLQKDF MEYGVKHLKP LNLKTVAEIV GLHESTVSRA TSNKYIQTPQ GVFEMKFFFS TGLTSAGGGM TSAESIKKTL RELIASEDAR KPLNDQKISD IFAERGIKIS RRTVAKYRDE LNIPPLKQRK RY
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