| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4206 |
|---|
| Symbol | |
|---|
| ID | 5714707 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009959 |
|---|
| Strand | + |
|---|
| Start bp | 53586 |
|---|
| End bp | 54509 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641277101 |
|---|
| Product | aminotransferase class IV |
|---|
| Protein accession | YP_001542397 |
|---|
| Protein GI | 159046729 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACCC ACACCACCCA CGACGCGCTC GAAGACCCGC GCAACGCCGA CATCCGGATC
TACATCAACG GCGCGCTCAA GCACCGGAGC GAGGCAATGG TCTCGGTCTA CGATTCCGGC
TTCATGCTGG GCGACGGGAT GTGGGAAGGA TTGCGGCTCT ATGACGGGGT CTGGGCCTTC
CTCGACGACC ACATGGACCG CTTCTACAAC TCCTGCAAGG CCGTCAGCCT CGATGTCGGC
ATGGACCGCG CCGCCCTGTT CGACGCGCTC GAGACGACCC GCCGCGCCAA CGACATGCAC
ACCGATGTCC ACTGCCGCCT GATGCTCACC CGCGGGGTGA AGGTCCGGCC GTTCCAGCAC
CCGGCCCTGT CGCGCTCCGG CCCGACCCTG GTGATCCTGA TGGAGCATTC CAAACCCGTG
GACCGGCTCC ATGACAAGGG CATCCGGCTG GCCACCGTCC CCCAGGTCCG CGGCCTGCCC
ATGAGCCAGG ACGCCAAATA TAACAGCCAC TCCAAACTGA ACTGCGTCAT CGCCTGCCTG
CAGGCCGAGC AGGCCGGGGC GGACGAGGCG CTGATGCTCG ACCCCCATGG CTTCGTGAAC
ACCACCAATG CCTGCAACTT CTTCATCGTC CGCAAGGGCG AGGTGTGGAC CTCCACCGGC
GACTACTGCA TGAACGGCGT GACCCGGCAG AAGGTCATCG ACCTGTGCCG CGCAAATGGC
ATCCCCGTGC GCGAGAAGAA CTATTCCCTC TACGAGGCGA TCGGCGCGGA CGAGGCGTTC
CTGACCGGCA CCTTCGGCGC CCAGACCCCG GTGGCCAGCA TCGATGGCAA GCCCATCGGC
GACGGCACCC GGCCCGTCAC CGCCCGGATA CAGGCGCTCT ACAAGGCGCT CATCCGCGAC
CACGTGGCCG CACACAGCAC CTGA
|
|---|
| Protein sequence | MDTHTTHDAL EDPRNADIRI YINGALKHRS EAMVSVYDSG FMLGDGMWEG LRLYDGVWAF
LDDHMDRFYN SCKAVSLDVG MDRAALFDAL ETTRRANDMH TDVHCRLMLT RGVKVRPFQH
PALSRSGPTL VILMEHSKPV DRLHDKGIRL ATVPQVRGLP MSQDAKYNSH SKLNCVIACL
QAEQAGADEA LMLDPHGFVN TTNACNFFIV RKGEVWTSTG DYCMNGVTRQ KVIDLCRANG
IPVREKNYSL YEAIGADEAF LTGTFGAQTP VASIDGKPIG DGTRPVTARI QALYKALIRD
HVAAHST
|
|---|
| |