| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4160 |
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| Symbol | |
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| ID | 5714730 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009959 |
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| Strand | - |
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| Start bp | 7713 |
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| End bp | 8699 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641277055 |
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| Product | protochlorophyllide oxidoreductase |
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| Protein accession | YP_001542351 |
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| Protein GI | 159046683 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | [TIGR01289] light-dependent protochlorophyllide reductase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.297736 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTTG ACCCCATGCC CCGTGCCATC GTCACCGGCG CCTCCTCCGG GGTGGGCCTG
CACGCGACGA AATCCCTGAT CGACCGGGGC TGGCATGTGA CCATGGCCTG CCGGGACCTG
GCCAAGGCCG AGGCGGCGGC GCGGTCGCTC GATCTGGACC CGGGCCGCTA CGCGCTGGCC
CATCTGGACC TCGGATCGCT GGCCAGCGTG CGCGCCTTCC ACGCCAACAT CGCCCGCGAC
CATGACAGCC TCGATGCGCT GGTGTGCAAC GCCGCGGTCT ATAAGCCCCG GCTGACCCAG
CCCGGCCGCT CCCCCGACGG GTTCGAGATC AGCGTCGCGA CCAACTATTT CGGGCATTTC
CTGCTCGCCA ACCTGATGCT GCCGCTGCTG GAGGGCGCCC CGTCCCCGCG GCTGATCACC
CTGGGCACCG TGACCGCCAA TTCCGAGGAA TTCGGCGGCA AGGTCCCGAT CCCCGCCCCG
GCGGACCTGG GCGATTTTGC CGGGCTGAAG GCCGGCTTCC GCGCCCCGGT GGCGATGATC
GACGGCAAGC CGTTCAAGGC GGGCAAGGCC TACAAGGACA GCAAGCTCTG CACCATGATG
ATGAGCCGGG AGCTGCACAC CCGCCACCAC GCGCGGACCG GGATCGTCTT CGCCACGCTC
TATCCCGGCT GCGTCGCGGA CACGCCGCTG TTCCGCGACA CGCCCAAGGC GTTCCAGACG
ATCTTCCCCT GGTTCCAGAA AAACGTCACC AAGGGCTATG TCAGCCAGGC CCTGTCCGGC
GAACGGGTCG CCATGGTCGT GGCCGACCCG GAGTTCGCGC AGTCCGGCGT GCATTGGAGC
TGGGGCAACC GCCAGCGCGA AGGCCGCAGC GCCTTTGCCC AGGGCCTGTC CACCAAGGCC
ACGGATGCCG CCCGCTCCGC AGAGCTGTGG GAGCTGACCG CAGCCCTCAC CGGGCTGACC
ACCCCCGCCG AGCCGGTCGC CGCCTGA
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| Protein sequence | MTLDPMPRAI VTGASSGVGL HATKSLIDRG WHVTMACRDL AKAEAAARSL DLDPGRYALA
HLDLGSLASV RAFHANIARD HDSLDALVCN AAVYKPRLTQ PGRSPDGFEI SVATNYFGHF
LLANLMLPLL EGAPSPRLIT LGTVTANSEE FGGKVPIPAP ADLGDFAGLK AGFRAPVAMI
DGKPFKAGKA YKDSKLCTMM MSRELHTRHH ARTGIVFATL YPGCVADTPL FRDTPKAFQT
IFPWFQKNVT KGYVSQALSG ERVAMVVADP EFAQSGVHWS WGNRQREGRS AFAQGLSTKA
TDAARSAELW ELTAALTGLT TPAEPVAA
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