Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_4121 |
Symbol | |
ID | 5714667 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009958 |
Strand | + |
Start bp | 52382 |
End bp | 54934 |
Gene Length | 2553 bp |
Protein Length | 850 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641277023 |
Product | glycosyl transferase family protein |
Protein accession | YP_001542319 |
Protein GI | 159046650 |
COG category | [R] General function prediction only |
COG ID | [COG1216] Predicted glycosyltransferases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.276059 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCAACGCC TCAAGGGGGT ATTCCATCGC TATGCGGATC GCCATCTGAC GCTGGATCTG CCGGGTTTTT CCCTCGGGGA GCCCGTCGAA GAAGGTCAGC CCCTGGGGCA TGTGGACCTC GTGGCGGCGC GGGGTAATCG GCTGCGTGTG GTGGGCTGGA GCACCGCGGA TCGGATCACC CTGAGCTGGA ACGGAGGGCA GGCCAGCTGC CGCCCGCATA TCCCGCGCGA GGATGTGGCC AACGCCCTGG GCTTGGGGCG GTATGTCGGG TTCGAATTAG ACGCGCCGCT GGAGGCCTTT CCTTATCTGT TGACCCTCGA TCACGGAGGC GGGCGTGCCG AGCTGCCCCT TGCCGGGATG AGCCTGGAGG CCCTGCGGCG CGCCCGGGGC CGTTTGCGGT GGCGGTTTCT GGGCAAGCTG ATGGTCATGT CGCCCCTGCT GGGCCGCTAT GTCCTGCGCC GTGACCCGGT CACCCGGGAC CGGATCAAGC GGGCGCTTTC GCTGGAGGCG GTGCCCCGGG CCGGGCCGAT GGAGACTGCG CTCTTCACCT TCGCCGAGGG CGAGGAGTTG GCCTTTCCCA CGGACCTGCC GATCACCGTG GTGATGCCAG TCTACAATGC GCTGGATCTG ACCCGGGCCG CGTTGGCGCG GGTGGCCGAG CACACGGATC TGCCCTGGCA CGCCATCGTG ATCGAGGATT GTTCCACCGA CCCGGAGGTT CGGCCTTGGC TGCGCGGCTG GGCCACGGCC CAGAACGCGG CCCAGCCCGG GCGTGTGAGC TTGCTGGAAA ACGAGACCAA CCTGGGCTTC ATCGACTCGG TCAATCGCGG CTTTGCCGCC GCCCTGGAGC GCGGGCATCA CGTGGTGCTG CTGAACTCCG ACGCGCTGGT GCCGCCGGGC TGGGCGTCGC GGCTCCTGCG GCCCATGGTG GTCCATGACA ACGTGGCCAG CGTCACGCCC ATGTCCAACG ACGCGGAGAT CTTCTCCAGC CCGGTGATCT GTGCGCGCAG CATGCTGGCG CCGGGCGAGG CCGAGGCGGT GGACGCGGTG GCGCGCGGCT TTCATCCCGA GGCGACCCTG TCGGTGGCGC CCACCGGGGT GGGGTTCTGC ATGGCCATGC ATATCGACTG GCTGCGTCGG TTCCCGACGC TCGATCCGGT GTTCGGGCGC GGTTATGGCG AGGAGGTCGA CTGGTGTCAG AAGGTGCGCG CCCGTGGCGG GCGGCACCTG GGCCTGCCTG GGCTTTACGT GGAGCATCGG GGCGGCGAGA GCTTCGGGTC CGAGGAGAAG CAGCGGCTCA TTCACACCAA CAACCAGATC GTCGCCAAGC GCTACCCGAG CTATGACCGG GAGGTGCAGG GCTTTATCGC GGCCGATCCG CTGATCACGC CCCGGGTGGC CTTGGCGGTC GGGCTGGTGG CGGCGCGGGC CCGGGCGGCG GAGGCGGCCC TGCCCATCTA CCTGGCCCAT TCCCTGGGCG GCGGGGCCGA AGACGACCTG GCGCGCCGGG TGGCCGAGGA TGTGGATCGG ATCGGCGGGG CAGTGATCCT GCGGGTTGGC GGGCCGCAAC GCTGGCAGGT CGAGGTGGTT ACCCCTGCTG GCCAGGTCGC CGGCGGGACC GACGAGTTCG GCTTCGTGCA GGCGCTGCTG GCGCCCGTGG GTGCGCGGCG GCTGATCTAT TCCTGCGGGG TGGGGGATGC GGACCCGGCG GAGCTGCCGG CGCTGCTGCT GTCACTGCGC AAGTTCGCCA TGCGCGACCC GGTCGAGGTG CTGGTGCATG ACTATTTCCC CCTGAGCCCG TCCTACTGTC TGCTGGACAG CGACCATGTG TTCCGCGGGC TGCCGCCGCT GGACACCGCC GATCCGGCCC ATGGAATTGC CCGCCCGGAC CAGGGGCTTC TGGATCTGGC GGGCTGGCGC GCGGCCTGGG GGCCGCTGAT GACCGCGGCA CGCGAGATCA CGGTCTTTTC CGAAAGTAGC CGGGACCTGG TCGCAGAAGC CTACCCGGCG GCCCGGGCGG CGATCCGCGT CCGGCCCCAC CGTTTGCTGA ACGAGGTGCC GCGCATCCCC GTGCCGGGGC CCGACGCGGC CCCCGTGGTC GGAGTGCTCG GCAATATCGG GGTGCAGAAG GGGGCCCAGC TGGTGCAGGA CATGGCCCGC ACCCTTCATG GCAGCGGCGC GCGGCCGACC GATCCGGGCC TGGTCCTGAT CGGCAATATC GACCCGGCCT TCGGGCTGCC CGAGGGAATG GCGGTCCATG GCACCTACCG GATCGCGGAT CTGGCGCAGA TCGTCGGGAA ATACGGCATC ACCTGCTGGC TGATCCCCTC GGTCTGGCCC GAGACCTTCT CCTTCACCAC CCATGAGGCG CTGGCCAGTG GCCTGCCGGT CTATGCCTTC GATCTCGGCG CCCAGGGGGC GGCCGTGGCG GCGGCCGGGA ACGGTCGGGT CATCCCCTTC GATCCCGATG CCGATCCGGC CCGGACGGTG CTGGAGCGGT TGCGGGCGGA TCTGGGTATT GCCGCAGGAC ATGTGGCGCC GGTTTCTGCA TGA
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Protein sequence | MQRLKGVFHR YADRHLTLDL PGFSLGEPVE EGQPLGHVDL VAARGNRLRV VGWSTADRIT LSWNGGQASC RPHIPREDVA NALGLGRYVG FELDAPLEAF PYLLTLDHGG GRAELPLAGM SLEALRRARG RLRWRFLGKL MVMSPLLGRY VLRRDPVTRD RIKRALSLEA VPRAGPMETA LFTFAEGEEL AFPTDLPITV VMPVYNALDL TRAALARVAE HTDLPWHAIV IEDCSTDPEV RPWLRGWATA QNAAQPGRVS LLENETNLGF IDSVNRGFAA ALERGHHVVL LNSDALVPPG WASRLLRPMV VHDNVASVTP MSNDAEIFSS PVICARSMLA PGEAEAVDAV ARGFHPEATL SVAPTGVGFC MAMHIDWLRR FPTLDPVFGR GYGEEVDWCQ KVRARGGRHL GLPGLYVEHR GGESFGSEEK QRLIHTNNQI VAKRYPSYDR EVQGFIAADP LITPRVALAV GLVAARARAA EAALPIYLAH SLGGGAEDDL ARRVAEDVDR IGGAVILRVG GPQRWQVEVV TPAGQVAGGT DEFGFVQALL APVGARRLIY SCGVGDADPA ELPALLLSLR KFAMRDPVEV LVHDYFPLSP SYCLLDSDHV FRGLPPLDTA DPAHGIARPD QGLLDLAGWR AAWGPLMTAA REITVFSESS RDLVAEAYPA ARAAIRVRPH RLLNEVPRIP VPGPDAAPVV GVLGNIGVQK GAQLVQDMAR TLHGSGARPT DPGLVLIGNI DPAFGLPEGM AVHGTYRIAD LAQIVGKYGI TCWLIPSVWP ETFSFTTHEA LASGLPVYAF DLGAQGAAVA AAGNGRVIPF DPDADPARTV LERLRADLGI AAGHVAPVSA
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