Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_4009 |
Symbol | |
ID | 5714538 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009957 |
Strand | - |
Start bp | 77303 |
End bp | 78163 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641276921 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001542217 |
Protein GI | 159046547 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.671239 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCAGA TCAGGTATTT TTTGGCTGTC TGCCAGCATC GCAACTTCAC CCATGCCGCC AGTGCCTCAA ATGTTTCCCA ACCGTCCTTG ACGACCGCGA TCAAGAAACT TGAACACGAG CTCGGGGGTG ATCTGTTTGT CAGGGACCGC GCGGGATGCA GGTTGACGGC ACTCGGAAAG CTAATGCAGC CAAGGCTACA GAAAGCGCAT GACGAAACGC AGGCAGCTAA GGCAGAAGCC GTCCGCCACA CGCGACTAGA GCGGGTTCCT ATTTCTGTCG GTGTTGGCGA AACGATTGGT CACAACCGGA TTTCAGCCGC CGTGGAACGC TTCCGTACAC GATTGCCGCA GGCCGAAATA GAGTTGATCG TGGCGTCTAC CTCCAAGCTT CTGGCCGGAT TGCGAGAGGG TGAATTTGAC GTCGTTGTCA CAGCGGCAAC TGTCAGTGAA AACCTCTATC GAATAGACCA GCTCTATGAC GAGGCCTATA AGGTTGTGGT GTCCAAGTCG CACCCGTTGT CTGGACGAAA CGCTATTTCT CTTTCGACAC TCGCTGAAAC TGACATGCTC GATCGACCCA ATTGCGAAAT GCGCGATGCG TTGCATCGGG CATGTGCAGA CCAAGGTCAC GAACTCTACG CGGCCTATCG GTCAAATCGC GTGGATTGGT TAGTCGAACT CGCGCGGCAG GGATTAGGCG CGGTGATTTT GCCAACCACG GCAATTCCAG CAGATAGGGA CCTCGTTTCG ATACTCATCG ACGGCCTTGA AATTTCGCGA ACTGTTTCTG CTCTTCGTTA TCGGCACCAA ACGACGAGAC CAGAGACAAA TGATCTGATC CGTGAGATTG CGCGTGTGTA G
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Protein sequence | MNQIRYFLAV CQHRNFTHAA SASNVSQPSL TTAIKKLEHE LGGDLFVRDR AGCRLTALGK LMQPRLQKAH DETQAAKAEA VRHTRLERVP ISVGVGETIG HNRISAAVER FRTRLPQAEI ELIVASTSKL LAGLREGEFD VVVTAATVSE NLYRIDQLYD EAYKVVVSKS HPLSGRNAIS LSTLAETDML DRPNCEMRDA LHRACADQGH ELYAAYRSNR VDWLVELARQ GLGAVILPTT AIPADRDLVS ILIDGLEISR TVSALRYRHQ TTRPETNDLI REIARV
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