| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3840 |
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| Symbol | |
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| ID | 5714369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | - |
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| Start bp | 48774 |
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| End bp | 50414 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641276755 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_001542051 |
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| Protein GI | 159046380 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGGGC GGCGCAGCGG GGCTCAGGCC CTTGTGGAGA GCCTGTTTTC GGCGGGCGTG
GACACGGTCT ACGGCGTGCC GGGCGAGGAG ACCACGGCGC TGATGGCCGC CCTTCACGAC
AGCGAGATGG CGTTCGTGCT GTGCCGGCAC GAACAGGCGG CGGCCTTCAT GGCCGGGGTG
CATGGGCGGC TGACCGGGCG ACCGGCGGCG TGTCTCGCCA CGCTGGGGCC GGGGGCGACG
AACCTGGTGA CCGGGGTGGC CGATGCCACG CTGGATTTCG TGCCGATGAT TGCCATCACG
GGGCAGGGGG GGTGCGGCCG CCTTGGCCGG GAGAGCCACC AGATCATCGA CCTGGAGGCG
CTGTTTGCGC CGGTGACGAA ACAGAGCCGG ACCTTGCTGG AGGCCGACGC GGTGCCCGGG
GCCGTGGCCG AGGCCGTGCG CCTGGCCCGG GCGGAAAAGC CGGGCGCGGT GCATCTGTGC
CTGCCCGAGG ACGTGGCGGA CGCGCAGACC GCGCTGCGCG ATGTGCCGGT GCCCCAGGTC
CTGCCCAGCC CCCCCGCGCC GGAGGCGATT GCCCAGGCGC TGACCCTGTT GACCCGGGCG
GAACGGCCCA TCCTGCTGGC CGGGGCCGGG GTGATCCGGG CCGGGGCGAC GGCGGAGCTG
CGCGCCTTTG CCGAGGCGAC CGGGATCGCG GTGGTCACGA GCTTCATGGC CGGGGGCGTG
CTGCCGCCGG AGCACGAGTT GACCCTGTTC ACCGTGGGCC AGCCCGAAGG CGATTATGTG
GATCTGTCCT TCGAGGCGGC GGATCTGATC GTGTCGGTGG GGTTCGACCC GGTGGAATAC
CCTGCCGCGG ATCTGAGCCG GGACGGGGCG ATACCGGTGC TGCATCTCGG GGCCGGCCCG
GCCCCGGCGG ATGCGGGCTG GCACGTCGCC GGGCAGGTGG TCGCGGGCTT GCCCGAGACC
CTCGCGGCGC TCGCCGAGGC ACTTGAGGCG CGGCGCTGGG ACATGCCGCC GGCCTTTGCC
GGGGTGCAGG CGGGGATGCG CAAAGCCTTT GCAAGAGCCT ATTCCACGTC GTCGGAGGGG
CCGGTCGCGC CCCAGGATAT CTGCGCCGAG ATCACCCGGC AGTTGCGCGC CGAGGACACG
GTCCTGTCCG GCGTGGGGCT GCACAAGCTG TGGATCGCGC GGCATGTGCT GCCGCGGCGG
CCCGGGCAGG TGATCATTCC CAACGGGCTG GCGGGGATGG GCCTTGCCCT GCCCGGGGCG
GTTGCGGCGG CGCGGTTGCA GCAGGCGGGC CGGGTGCTCG CGATCTGCGG CGACGGGGAC
GTGATGATGA ACGTCCAGGA CATGGAGACG GCGGCGCGGC TGGGTCTCGA CCTGACGGTG
ATGGTCTGGG AGGACGGCGG CTATGGCCTG ATCGACGCGC ATCAGCAGAA GGCCGGGGAC
GACTCGACCT TCGGCTTCGG CACGCCCGAC TGGGGGCGGC TCGCGCGCGC CTTCGGCTGG
AGCCATGCGC CGGTCGCGGG CCTGTCGGAG TTGGGCGAGA TCCTGCGCGC GGGCCATGAC
AGCGCCGGGC CGACCCTGGT CTCCGTGCCG GTGGATTATG CCGCCGGAGG GGGCTTGCCG
GGGGTGCGCC CCGCGGCGTG A
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| Protein sequence | MAGRRSGAQA LVESLFSAGV DTVYGVPGEE TTALMAALHD SEMAFVLCRH EQAAAFMAGV
HGRLTGRPAA CLATLGPGAT NLVTGVADAT LDFVPMIAIT GQGGCGRLGR ESHQIIDLEA
LFAPVTKQSR TLLEADAVPG AVAEAVRLAR AEKPGAVHLC LPEDVADAQT ALRDVPVPQV
LPSPPAPEAI AQALTLLTRA ERPILLAGAG VIRAGATAEL RAFAEATGIA VVTSFMAGGV
LPPEHELTLF TVGQPEGDYV DLSFEAADLI VSVGFDPVEY PAADLSRDGA IPVLHLGAGP
APADAGWHVA GQVVAGLPET LAALAEALEA RRWDMPPAFA GVQAGMRKAF ARAYSTSSEG
PVAPQDICAE ITRQLRAEDT VLSGVGLHKL WIARHVLPRR PGQVIIPNGL AGMGLALPGA
VAAARLQQAG RVLAICGDGD VMMNVQDMET AARLGLDLTV MVWEDGGYGL IDAHQQKAGD
DSTFGFGTPD WGRLARAFGW SHAPVAGLSE LGEILRAGHD SAGPTLVSVP VDYAAGGGLP
GVRPAA
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