Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3834 |
Symbol | |
ID | 5714363 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009956 |
Strand | - |
Start bp | 43171 |
End bp | 44907 |
Gene Length | 1737 bp |
Protein Length | 578 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641276749 |
Product | signal transduction histidine kinase |
Protein accession | YP_001542045 |
Protein GI | 159046374 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3920] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.391649 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCCGGAAA CCAGAGCGCG GCCTGAGCCT GTGCGCCTGT CCTTGCGCAG CCTGCCGGTT CGGCTGATCG GCCTGATGAC GCTTGCCCTG CTGCCGCTCG GGTTGATCTC GCTCTACCAG ACGCGGAGCG TGATCGACCG GGCGGAGGAT CTGGCCCGCG GCGCCCTGAT CGCCGAAGCG CGGCAGGCCG TGGCCCTGGA GCGTCGGGTC CTGATCGAGG CGGTGGGCGC GGCCCGGGGG CTGGGGGTTG CCCTGTTGCC GCTTCTGGAC GATCCCGCCC GGTGCAGCGC GGTGCTGGGC GAATTCATCG ACCAAAGCAA CCAGATCGTG TTCGCCGGAT TCCTGCCGCC GGACGGGGTG ATGCGGTGTT CGAGCCATGG CGAGGAGGTG GATTTCTCGG ATTTTCCGGG ATTTGCAGAG TTGATGGCCG CGCCGGGCCT GAGTTTCGAG GTGAACGAAC AGGGCGCGGT GAGCGGCCAG TCAGTGATGA TCGCCAATGT GCCGATCTAT GCGGCGGGGG CATTTGCGGG TTATGTCGCG ATCTCGATCC CCCATGCCAT CGTCAACGAC CTGTTGCCGA GCCAACCCGC CGAGCGCGGG CTGGAGATCG TGGTGCTGAA CCGCGCGGGC GAGGTGATCT CCGCCTCCGA AGGGTTGGAC GGGGCTCGGG CGCTCTTGCC CGAGGCGCTG GATACCGGGG TCTTGCGCAG CGATGGCAGC ACCACCTTTC GGGGGCGGAA CCAAGCCGGG GAAGTACGGG TCTTTGCCAC CTTCACCCTG CTGGAGGACG AGGTGCTGGT GATCGGCAGC TGGCCCGTCG GCGCCATCGG GACGGCCCCG GCGCAGGGGC GGATGGCGGT GCTCTTCCCG CTGCTGATGT GGGCGGCTGG GGTGCTGGTG GCCTATTTCG GGCTGCACCG TCTGGTGATC CGCCATGTGA GCGCGTTGCG GGATGCGATG CGCCGCTTCG CCCTGGGGGA GCGGGACGTG GCGGCCCTGC AGCTCGACGC GCCCTCGACC GAGTTCGCCC AGGCGCAGCG GGCCTTCAAC CGGATGGTTC TGATCCTGTC GGAGGCGGAG GCCCGGCGGG AGCAGGATCT GCAGGACAAG GAGGTGTTGC TGCGCGAGGT GCATCACCGG GTGAAGAACA ACCTGCAGAT GATCGCCTCG ATCATGAACA TGCAGAGCCG GACCGTCACC GCGCCCGAGA CCAAGCGCGT GTTGCAGGGC TTGCAGCGGC GGGTGCAGGG GTTGGCGGCA ATCCACCGGA CGCTGTATAC AACGACCGAG ATGACCTGCG TGGACGTGGC GGCCTTGGCC GACGAGATGG TGTCGGAAGT CGCCGCCCTG GCCGGGCAGG GGGCGCGGGC GGTGACCGTG CGGCGGGATC TGACGCCCTT GCAGCTCTAT CCCGACCAGG CGGTGCCCCT GTCCATGGTG TTGTCGGAGA TGCTGACAAA TGCGTTCAAA TACGTGGGCC GGCCCGAGGA CGCGGCCGCG CGGATCGACG TGACCCTGAA GGCCGCACCG GACGGGCGAG TGGAGCTGGC GGTGGAGAAT ACGCGCGGCA CGCCCCTTGG CGAGGAACTG GACAATGACA GCACCGGCAT CGGCACCCGG CTGATGCGGG CCTTCGTGAT GCAGCTCGAC GGGGTCGAGG AGGTCGAGGA CCTGCCGGAC AGCTACAGGA TGGTGGTGCG GTTCCGCCCG GCGGAGTTCG TGCCCGATGC TGCCTGA
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Protein sequence | MPETRARPEP VRLSLRSLPV RLIGLMTLAL LPLGLISLYQ TRSVIDRAED LARGALIAEA RQAVALERRV LIEAVGAARG LGVALLPLLD DPARCSAVLG EFIDQSNQIV FAGFLPPDGV MRCSSHGEEV DFSDFPGFAE LMAAPGLSFE VNEQGAVSGQ SVMIANVPIY AAGAFAGYVA ISIPHAIVND LLPSQPAERG LEIVVLNRAG EVISASEGLD GARALLPEAL DTGVLRSDGS TTFRGRNQAG EVRVFATFTL LEDEVLVIGS WPVGAIGTAP AQGRMAVLFP LLMWAAGVLV AYFGLHRLVI RHVSALRDAM RRFALGERDV AALQLDAPST EFAQAQRAFN RMVLILSEAE ARREQDLQDK EVLLREVHHR VKNNLQMIAS IMNMQSRTVT APETKRVLQG LQRRVQGLAA IHRTLYTTTE MTCVDVAALA DEMVSEVAAL AGQGARAVTV RRDLTPLQLY PDQAVPLSMV LSEMLTNAFK YVGRPEDAAA RIDVTLKAAP DGRVELAVEN TRGTPLGEEL DNDSTGIGTR LMRAFVMQLD GVEEVEDLPD SYRMVVRFRP AEFVPDAA
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