| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3698 |
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| Symbol | |
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| ID | 5714228 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009955 |
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| Strand | - |
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| Start bp | 102214 |
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| End bp | 103740 |
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| Gene Length | 1527 bp |
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| Protein Length | 508 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641276616 |
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| Product | integrase family protein |
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| Protein accession | YP_001541912 |
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| Protein GI | 159046240 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTCCC CCTCGAACTC TCAACGCCGT GCGCGCGACC GCGCTGACAA CCTCGCTCTG
GTCGACACGT ACCACGCCGA CAATCCCGGG CTTTCCCAGG GTGCGCTGAG CGCAGCCCGC
CATTTTCTGA AGTGGGCGCA GGCACGGAAA GTCTCTGTCC GTGACCTCGA CGCGTCGGTT
GTAGACAGTT TTCTTCGTCA CCACTGCCGC TGCGGTCGCT ACAGCCCCAA TCAGTTGCGG
AGCCCGATGT ATGCCACCTA TACTCGCCGG TTTTTTCGAT ATCTCGAAGA CACCGGCATA
GTTGCGATCC CAAATGACAC TGCCCGGCTA AGACAGCACC TGGAGGCCTT TGCCAAGAAG
CTCGAGAGCG CTGGCTACAG CGAGGTATCG CGCGCATCAT TGCTCAGCCA TGCCGCCCAT
TTTGCTGAAT GGGTCCTACA ACAGCGAGTC CCGTTGACCG CAATCGGTGA AGGAACCATC
GATCAGTTCG CGTGGCACGA ATGCCGATGC GGGGAGATGA CCAAGCATGG CAACAGGGTT
CTGGCGTCTC ACTATAAGAA CCGTAAGCGA GGTGCCCATG CGCTTGTCCG GCACCTGATC
GACGAAGGTC TGCTCCCGCC CCAAGCACCT GACGACGTCT CCGCAGAAGA CCCGCGTCTG
ATCAGCTTTT CGGAATGGTT GCGCCGCGAG CGCGGGGTGG CACCCGAGAC CGTACGGCGC
TATTTGAACG AAGTGGGCCG CTGGCTGGAC AGCCTGGGGG CAACGCCGGA GGATTACGAT
GCGGCGGCCA TCCGTTCGAT CATATTGGAT CAAGGTGAAG AACGGTCCCA ATCATCTGTG
CGCAAGACGG TCACCGTGTT GCGAGCCTTC CTGCGCTTTA CGATCGTCCA AGGCGCATGC
GCCCCGTCGC TTCTGCATGC GGTGCCATCT GCTGTTCGGC GCAAGCTTTC TACAGTCCCC
CGCACGATCC CCACGGCGAA GATCGAAGAG ATCCTTGCCT CCTGTCGCAC CGATACGCCG
GTTGAGATCC GAGACCGCGC AATACTTCTC CTCCTCGCCC GGTTGGCCTT GCGCGCGGGA
GACATCTGGC AGTTGCACCT GTCAGATATC GACTGGCGCA CGAGTCGGTT GCGATTGCAC
GGCAAGGGCA GGCGTGGCGT TATGATGCCG CTGCCGCAGG ATGTAGGCGA TGCGCTGCTG
GTCTATATCG AAGATGCGCG TCCAGTGGTC GCGTCGAACA GGGTCTTTCT CCGAGTCCAG
GCTCCTTTCA CCCCGCTGCG ATCCTCTGCC GAGATCGCCG GGATCGTTTC CCGCGTCCTG
AGCCGGGGAG GTTTTACCGA CTTGCCGACT GGTTCGCATG TCTTTCGTCA TTCACTGGCC
TCCGCCTGGC TGCGTGGCGG TGCGGACCTT GACCTGATCG GTGCAGCGCT GCGCCACACC
TCGCGCGATA CGACCGCGAT CTACGCTAAG GTCGATGTTG GGATGCTGGA AGAAGTGGCT
CAGCCGTGGC CGGGAGACGC GTCATGA
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| Protein sequence | MNSPSNSQRR ARDRADNLAL VDTYHADNPG LSQGALSAAR HFLKWAQARK VSVRDLDASV
VDSFLRHHCR CGRYSPNQLR SPMYATYTRR FFRYLEDTGI VAIPNDTARL RQHLEAFAKK
LESAGYSEVS RASLLSHAAH FAEWVLQQRV PLTAIGEGTI DQFAWHECRC GEMTKHGNRV
LASHYKNRKR GAHALVRHLI DEGLLPPQAP DDVSAEDPRL ISFSEWLRRE RGVAPETVRR
YLNEVGRWLD SLGATPEDYD AAAIRSIILD QGEERSQSSV RKTVTVLRAF LRFTIVQGAC
APSLLHAVPS AVRRKLSTVP RTIPTAKIEE ILASCRTDTP VEIRDRAILL LLARLALRAG
DIWQLHLSDI DWRTSRLRLH GKGRRGVMMP LPQDVGDALL VYIEDARPVV ASNRVFLRVQ
APFTPLRSSA EIAGIVSRVL SRGGFTDLPT GSHVFRHSLA SAWLRGGADL DLIGAALRHT
SRDTTAIYAK VDVGMLEEVA QPWPGDAS
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