Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3513 |
Symbol | crtD |
ID | 5713744 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 3691944 |
End bp | 3693542 |
Gene Length | 1599 bp |
Protein Length | 532 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641269442 |
Product | methoxyneurosporene dehydrogenase |
Protein accession | YP_001534847 |
Protein GI | 159046053 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
TIGRFAM ID | [TIGR02734] phytoene desaturase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.705776 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGATCGGA ATGTGATGAC TCGCGCGCAA GACAAGGTCG TCGTGATCGG CGCGGGGATG GGCGGATTGG CGTCGGCCAT CCGTCTGGCC CATGCCGGGT GCGATGTGAC GGTGCTGGAG GCGCTGTCGG GGCCGGGGGG CAAGATGCGC ACCCTGCCGA GCGCGGCGGG GCCGGTGGAT GCGGGTCCGA CGGTGATGAC CCTGCGCCCG ATATTCGAAT CGCTGTTCGC CGATGTGGAG GCGGGTTTGT CGGACTACGT GACCCTGCAC CGAGAGACGG TGCTGGCGCG GCACTGGTGG TCCGATGGCA GCACGCTGGA CCTGTTTTCC GATGCAGAGG CGTCCGAGGC GGCGGTGCGC GCCTTCGCCG GCGCGCGGGA GGCGGCCGCC TTCGCCGCGT TCTCGGCTCA GGCGGCGAAG CTGTTCGCGG CCTTCGACGG GCCGATGATG CAGAACCCGG CGCCGGATCT GGCGGGGCTG ACGCGGCACG TGTTGGCGCA GCCTTCGGTG ATCCCGGCCA TGGGGCCGCT GACCACGCTG GCGCGCAGCC TGGCCAAGCG GTTTCGCGAC CCGCGGTTGC AGCAGCTTTT CGGGCGCTAC GCCACCTATG TGGGCGGCTC GCCCTATGCG TCGCCCGCGG TGCTGGCCCT GATCTGGCAG GCCGAAGCGC AGGGCGTCTG GCGCGTGGAG GGCGGGATGC ATGCGCTGGC GCAGGGGCTC GCGCGGCTCG CGGCGGAGAA GGGCGCGGAT CTGCGCTATG ATACCTGCGT TGCCCGGATC GAGACGCAAG GCGGGCGTGT GGCGGGCGTG CATCTGACCG ATGGCGCCCG GATCGCGGCG GACACGGTGG TGTTCAACGG GGATCCGCGC GCGCTGCATC TCGGCTTGCT GGGCCCGGCG GCCAAGCCCG CCGTGGCGGC CCCGGGGGTC GCGGAGCGCT CGCTCTCGGC CTATGTGTGG TCCTTCGCGG GCCAACCCGA GGGGCGCGAC CTGGTCCATC ACAACGTGTT TTTCGCGGAC GATCCGGCGC GGGAGTTCGA CGATCTCGCG GCCGGGCGGA TGCCCCGGGA CGCGACCCTT TACCTTTGTG CCGAGGATCG GGGCGCGGGG CTGACCCCCG CCGGGCCCGA GCGATTCGAG GTCATCATGA ACGGCCCCCC GGTCGCCGGT GCGGCCGGTT TGCGGGACGA CCACGAGGAG TTTCACGCAT GTCAGACGCA AGTCTTCACT CGCTTCGCAG CCATGGGGCT GCGATTCCCG GAACGCCCCG GACGGGAGGC GTTGACCATG CCGCGGGACT TCGCGCGCCT GTTTCCCGGG TCGGCCGGAT CCCTCTACGG GCGGAGCCCG CACGGGTTGA TGGCGGCGTT CCAGCGGCCC CAGGCGCGCA CGAAGCTGCC GGGGCTGTAC CTGGCGGGGG GCGGGGCGCA TCCGGGGGCG GGCATTCCGA TGGCGACCCT TTCCGGCAAG CACGCGGCCG CGGCGATCTT GAGCGACCGA ACTTCAACCT CGACGTTCCG GCCGACGGCT ACGCGTGGTG GTATATCGAC GGGATCAGCG ACTGCGGCAC CCGCGCGATC TCGATCATCG CTTTCATAG
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Protein sequence | MDRNVMTRAQ DKVVVIGAGM GGLASAIRLA HAGCDVTVLE ALSGPGGKMR TLPSAAGPVD AGPTVMTLRP IFESLFADVE AGLSDYVTLH RETVLARHWW SDGSTLDLFS DAEASEAAVR AFAGAREAAA FAAFSAQAAK LFAAFDGPMM QNPAPDLAGL TRHVLAQPSV IPAMGPLTTL ARSLAKRFRD PRLQQLFGRY ATYVGGSPYA SPAVLALIWQ AEAQGVWRVE GGMHALAQGL ARLAAEKGAD LRYDTCVARI ETQGGRVAGV HLTDGARIAA DTVVFNGDPR ALHLGLLGPA AKPAVAAPGV AERSLSAYVW SFAGQPEGRD LVHHNVFFAD DPAREFDDLA AGRMPRDATL YLCAEDRGAG LTPAGPERFE VIMNGPPVAG AAGLRDDHEE FHACQTQVFT RFAAMGLRFP ERPGREALTM PRDFARLFPG SAGSLYGRSP HGLMAAFQRP QARTKLPGLY LAGGGAHPGA GIPMATLSGK HAAAAILSDR TSTSTFRPTA TRGGISTGSA TAAPARSRSS LS
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