| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3350 |
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| Symbol | selD |
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| ID | 5712408 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3518104 |
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| End bp | 3520233 |
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| Gene Length | 2130 bp |
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| Protein Length | 709 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641269279 |
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| Product | selenide, water dikinase |
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| Protein accession | YP_001534684 |
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| Protein GI | 159045890 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0709] Selenophosphate synthase
[COG1252] NADH dehydrogenase, FAD-containing subunit |
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| TIGRFAM ID | [TIGR00476] selenium donor protein
[TIGR03169] pyridine nucleotide-disulfide oxidoreductase family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACACCC CCTATCCCTT GACCCAGGAC GTCGTTCTGG TCGGCGGTGG TCACACCCAT
GCGCTGGTCT TGCGGAAATG GGCGATGAGC CCGCTGCTAG GGGCGCGGCT GACCCTGATC
GACCCGAATC CGACCGCGCC TTATTCCGGG ATGTTGCCGG GCCATATCGC CGGACATTAT
GACCGCGCCG CGCTGGAGAT CGACTTGGTC CGGCTGGCGC GCTTTGCCGG GGCGCGGCTC
GTGTTGGGCC GAGCAGAGGG GCTGGACCTC GCTGCCCGGG AAATCCACGT GTCGGGTCGC
CCGCCGATCC GCTATCACCG GGCGTCGCTC GACATCGGCG TGACCTCCCG CCTGCCGGAT
CTGCCTGGTT TCACGGATCA TGCTCTGGCG GCCAAGCCGC TCGGCGCATT CGCGGATCGC
TGGGAAGCGT TCTGCACCAA CCCGCCCCCG GAACCCCATG TGCTGATCCT GGGCGGCGGC
GTCGCCGGGG TCGAACTGGC CATGGCCTGT GCGCATCGGT TGGGCGCTAC GGCGAAAGTC
ACCCTGATCG AGGCGAGCGA TACGGCCCTC GCGGGCATGA ACGCCAAGAC CCGCGATACC
CTTCTGGGCG AGATGGCCGC GCAAGGCATC ACCCTGCGCC TGAATGCCCG TGCCGCCGAG
ATCGGCGCGG ATCACGTGCG GCTGGAGGGG GGCGAGGCCC TGCGCGCCGA CATCACCATC
GGAGCCACCG GCGCGCGCCC GCAAGACTGG CTGGCGCAGA CCGGCCTCGC CCGTGTCGAT
GGGTTCGTCG CCGTGGATGA CCAGTTGCGC AGCCTTTCCG ATGATCGGAT CTATGCGGTG
GGCGATTGCG CTCATATGGG CTTTGCGCCC CGGCCCAAAG CGGGCGTCTA TGCCGTGCGC
CAGGCGCCGA TCCTTTATCA TAACCTGCGC GCGGACCTGA CGGGACGTGC CCGCAAGCGC
TACAAGCCGC AGTCGGATTA CCTCAAGCTT GTGTCCACGG GCCGCAAGGC GGCCGTGGCC
GACAAGGCCG GGATGCGCAG CTCCGGCGCT CTGTTGTGGC GCCTGAAAGA CCGCATCGAC
CGCAAGTTCA TGGCGAAGTT CCACGACCTG CCCGCGATGT CCGCGCCGGA TCTGCCACGC
CTCCGGGCCG AAGGTGTCCA AGCGGCGCTA TCGGGCAAAC CCCTTTGCGG CGGCTGCGGG
GCAAAGGTGG GCGCGGGGTT GCTGAGCGAC GTATTGGCAG GGCTCCCTTC CCCAGCCCGC
GACGACGTGC TGTCCCGCCC CGGGGACGAT GCGGCAATCC TGCGCCACGG GGCGGGCCAG
CAAGTGATCA CTACCGATCA CCTGCGCGCC TTTGTCGAAG ACCCGTACTT GATGACCCGC
ATCGCTTTGC AGCATGCGTT GGGTGATGTC TGGGCCATGG GTGCTGATCC GCAAGCCGTG
TTGTCCCAGA TCATCCTGCC CAAGGCCACC CCGGCCGTGC ATGCGGGCAT GCTGGCCGAG
ATCACCGCCG CCGCCAGCGA AGGCGCGCGC GCCGTAGGGG CCGAGCTTGT GGGCGGGCAT
ACCAGTATTG GGGCGGAGTT GAGCATCGGC TTTACCGTGA CCGGGCTCGC GCCCGCCCGC
GCCATCGGTC TCGACGGCGC GCGTCCCGGA GATCGCCTTG TCCTGACCCG TCCCATTGGC
ACCGGCGTGC TTCTGGCGGC GGAAATGCAG GCCGCGGCTC CCGGGCAGCA GGTTGCGGCC
CTGTGGGAAT TGCTGGCCGC GGATCAATCC AAGACCGCGC GCCACCTTGC TGCCAAGGCG
CATGCCATGA CGGACGTGAC CGGGTTCGGG TTGGCAGGGC ATCTCGCGCG GCTCTGTGCG
GCCTCGGGCA CCGGGGCCGA GATTCGTCTG GACGCGATCC CGATCCATGC CGGGGCCGAG
GCGTTGGCGG CGGCCGGGCA TCGCTCCTCT CTCTATCCGG CCAATCGCGC GCTTGTGCCC
GACTGGCCGG AGACGACGCC CCGCCATGAA TTGCTCTTCG ATCCGCAAAC CGCTGGCGGA
CTGTTGGCTG CCCTGCCGCC GGGTGATCCG GTCCCCGGCA CCGTGGAGAT CGGGCGCGTT
ACCGCCGATC CAGGCCTGCG CCTCGTCTGA
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| Protein sequence | MHTPYPLTQD VVLVGGGHTH ALVLRKWAMS PLLGARLTLI DPNPTAPYSG MLPGHIAGHY
DRAALEIDLV RLARFAGARL VLGRAEGLDL AAREIHVSGR PPIRYHRASL DIGVTSRLPD
LPGFTDHALA AKPLGAFADR WEAFCTNPPP EPHVLILGGG VAGVELAMAC AHRLGATAKV
TLIEASDTAL AGMNAKTRDT LLGEMAAQGI TLRLNARAAE IGADHVRLEG GEALRADITI
GATGARPQDW LAQTGLARVD GFVAVDDQLR SLSDDRIYAV GDCAHMGFAP RPKAGVYAVR
QAPILYHNLR ADLTGRARKR YKPQSDYLKL VSTGRKAAVA DKAGMRSSGA LLWRLKDRID
RKFMAKFHDL PAMSAPDLPR LRAEGVQAAL SGKPLCGGCG AKVGAGLLSD VLAGLPSPAR
DDVLSRPGDD AAILRHGAGQ QVITTDHLRA FVEDPYLMTR IALQHALGDV WAMGADPQAV
LSQIILPKAT PAVHAGMLAE ITAAASEGAR AVGAELVGGH TSIGAELSIG FTVTGLAPAR
AIGLDGARPG DRLVLTRPIG TGVLLAAEMQ AAAPGQQVAA LWELLAADQS KTARHLAAKA
HAMTDVTGFG LAGHLARLCA ASGTGAEIRL DAIPIHAGAE ALAAAGHRSS LYPANRALVP
DWPETTPRHE LLFDPQTAGG LLAALPPGDP VPGTVEIGRV TADPGLRLV
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