Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3245 |
Symbol | |
ID | 5712302 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 3413789 |
End bp | 3414574 |
Gene Length | 786 bp |
Protein Length | 261 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641269173 |
Product | putative proteasome-type protease |
Protein accession | YP_001534579 |
Protein GI | 159045785 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3484] Predicted proteasome-type protease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.716596 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCTGC CGGAGCATGG CAGCCGGGAA CGTGAAATGA CTTATTGTGT GGGGCTGAAA ATGGCCCGCG GCATGGTGTT CATGTCGGAT ACGCGCACCA ATGCGGGCGT CGACAACATC TCGACCTTCC GCAAGATGGC AAGCTGGGAG CAGCCGGGCG AGCGGGTCAT CACCCTGATG ACCGCGGGCA ACCTGGCCAC GACCCAGTCG GTGGTCAGCC TGCTGGAGGA GCGGATGAAG GCCCCGGGGG AACGCAGCCC CTCGGTCTTC GAGGCGCCGT CGATGTTCCA GGTGGCGCGG ATGGTCGGTG CGACCCTGCG CGAGGTGATC CAGTCGAACG CCAATACCGG CGCGCGGGCC GACAGCACGT TCAACGCGAC GCTGCTTCTG GGTGGGCAGG TCAAGGGCAG CGCGCCGCGG CTGTTCATGA TCTATCCGGA GGGGAATTTC ATTGAGGCCT CGGACGACAC GCCGTTCTTC CAGATCGGGG AGACGAAATA CGGCCGGCCC ATCCTGGTGC GCGCCTTCGA TCCGGAGATG AGTTTCGAGG ACGCGATCAA GCTCTTGCTG GTGAGTTTCG ATTCGACCAT CAAGGCGAAC CTGTCGGTGG ATCTGCCGCT GGACGTGCAG GTGATCGAGA CCGATGCGCT GCGTCTGGGC TATGCCGCCC GGATCACCGC CGATGACAGC TATTTCCAGA CGATTTCCAG CGGCTGGGGC GAGGCCTTGA AGATGGCTTT CGACAGCCTG CCGAAATTCC GCATGGACGA CAGCCGGGAG ACCTGA
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Protein sequence | MALPEHGSRE REMTYCVGLK MARGMVFMSD TRTNAGVDNI STFRKMASWE QPGERVITLM TAGNLATTQS VVSLLEERMK APGERSPSVF EAPSMFQVAR MVGATLREVI QSNANTGARA DSTFNATLLL GGQVKGSAPR LFMIYPEGNF IEASDDTPFF QIGETKYGRP ILVRAFDPEM SFEDAIKLLL VSFDSTIKAN LSVDLPLDVQ VIETDALRLG YAARITADDS YFQTISSGWG EALKMAFDSL PKFRMDDSRE T
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